TkA04G123190 | RubberDandelionOmics

Gene overview

TkA04G123190

Reference: TK1151 Chr: Chr04 Coordinates: 32035774-32036181 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

408 bp · TkA04G123190|TK1151|cDNA

ATGGTGAAGTTTTTGAAGCCAAACAAGGCTGTGGTGGTTCTCAACGGCCGTTTTGCCGGACGGAAAGCGGTGATCGTGAGGCAATTTGACGACGGAACTCGTGACCGTCCCTATGGCCACTGCCTCGTTGCCGGAATCGCCAAGTACCCGAAGAAGGTGATCCGAAAGGACTCAGCAAAGAAGACGGCGAAGAAGTCGCGTGTGAAGGCATTTATCAAGCTAGTGAACTACAACCACATCATGCCGACTAGGTACACGCT...

CDS

Download CDS FASTA

408 bp · TkA04G123190|TK1151|CDS

ATGGTGAAGTTTTTGAAGCCAAACAAGGCTGTGGTGGTTCTCAACGGCCGTTTTGCCGGACGGAAAGCGGTGATCGTGAGGCAATTTGACGACGGAACTCGTGACCGTCCCTATGGCCACTGCCTCGTTGCCGGAATCGCCAAGTACCCGAAGAAGGTGATCCGAAAGGACTCAGCAAAGAAGACGGCGAAGAAGTCGCGTGTGAAGGCATTTATCAAGCTAGTGAACTACAACCACATCATGCCGACTAGGTACACGCT...

Protein

Download Protein FASTA

135 aa · TkA04G123190|TK1151|PROTEIN

MVKFLKPNKAVVVLNGRFAGRKAVIVRQFDDGTRDRPYGHCLVAGIAKYPKKVIRKDSAKKTAKKSRVKAFIKLVNYNHIMPTRYTLDVDLKDIVTVDALQSNDKKVTACKETKARLEERFKTGKNRWFFSKLRF

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA04G123190`
TK1151 ID	TkA04G123190
OH-1004 ID	LXL04_035566
Relationship / confidence	Multi Source To Oh1004 / Complex relationship
Protein identity (%)	100.000
Protein coverage (%)	TK1151 100.000 / OH-1004 100.000 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

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Basic Information and Functional Annotation

Gene ID TkA04G123190

Location Chr04:32035774-32036181 (+)

Description Similar to RPL27C: 60S ribosomal protein L27-3

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At4g15000`	Large ribosomal subunit protein eL27x.	No verified direct reference in this release
`At3g22230`	Large ribosomal subunit protein eL27y.	No verified direct reference in this release
`At2g32220`	Large ribosomal subunit protein eL27z.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_035566 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0006412 translation Biological Process

GO:0005737 cytoplasm Cellular Component

GO:0005783 endoplasmic reticulum Cellular Component

GO:0005829 cytosol Cellular Component

GO:0005840 ribosome Cellular Component

GO:0022625 cytosolic large ribosomal subunit Cellular Component

GO:0022626 cytosolic ribosome Cellular Component

GO:1990904 ribonucleoprotein complex Cellular Component

GO:0003729 mRNA binding Molecular Function

GO:0003735 structural constituent of ribosome Molecular Function

KEGG gene cross-reference

ath:AT2G32220

ath:AT3G22230

ath:AT4G15000

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.791

Rank 1 · TkA04G123190 · TK1151

Nucleus0.250

Rank 2 · TkA04G123190 · TK1151

Endoplasmic reticulum0.052

Rank 3 · TkA04G123190 · TK1151

Mitochondrion0.022

Rank 4 · TkA04G123190 · TK1151

Cell membrane0.010

Rank 5 · TkA04G123190 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00467KOW8-36 aa

PF01777Ribosomal_L27e11-135 aa

PF00467KOW88-98 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA04G123190	`PF00467`	KOW	8	36	2.7e-05	24.5
TkA04G123190	`PF01777`	Ribosomal_L27e	11	135	5.1e-47	159.9
TkA04G123190	`PF00467`	KOW	88	98	2.7e-05	24.5

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`P51419`	Arabidopsis thaliana	sp\|P51419\|RL273_ARATH Large ribosomal subunit protein eL27x	80.700%	Swiss-Prot	High
`Q8LCL3`	Arabidopsis thaliana	sp\|Q8LCL3\|RL272_ARATH Large ribosomal subunit protein eL27y	80.000%	Swiss-Prot	High
`Q9SKX8`	Arabidopsis thaliana	sp\|Q9SKX8\|RL271_ARATH Large ribosomal subunit protein eL27z	72.600%	Swiss-Prot	High

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