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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA04G121610
Reference: TK1151 Chr: Chr04 Coordinates: 31593825-31596850 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

2085 bp · TkA04G121610|TK1151|cDNA

ATCGGGATAAACAAAGTGATAGATCCAATACAAGCACGGGATGCCAAGTTACATGAAAAGAAAGGTCTTGAAGTTTTGAAGATGGAATGGAGTGATGTGTTTGATGATTCTCGGAATGAGATGATTGAATATGAAGTGCTAAAGGAACTACGGCCTCCTTCTATGTTAGAAAAGCTCGAGATTTTGAACAACAAGGGTGCGACATTTCCTAGTTGGGTTGGCGATCCCTCGTTTGATCATTTAACAAAGATTACATTAAG...

CDS

Download CDS FASTA

1434 bp · TkA04G121610|TK1151|CDS

ATGGAATGGAGTGATGTGTTTGATGATTCTCGGAATGAGATGATTGAATATGAAGTGCTAAAGGAACTACGGCCTCCTTCTATGTTAGAAAAGCTCGAGATTTTGAACAACAAGGGTGCGACATTTCCTAGTTGGGTTGGCGATCCCTCGTTTGATCATTTAACAAAGATTACATTAAGTGGTTGTAGAAGTACACACTTACCAACACTTGGAGTTCTAGGGTCTTTAAGGAAATTGTTTGTTGAAAGGATGGGTGAGGT...

Protein

Download Protein FASTA

477 aa · TkA04G121610|TK1151|PROTEIN

MEWSDVFDDSRNEMIEYEVLKELRPPSMLEKLEILNNKGATFPSWVGDPSFDHLTKITLSGCRSTHLPTLGVLGSLRKLFVERMGEVKTVGFELLAPTTSFLGVAFPSLQVLEFDDMQGWEKWSIDIGGDHGTCTSFPCLGKIVIKRCPKLDQVSVGLIPSLRVLIIEECSKEVLRSLIGLSLSLVQLEIIKVNGLTQLHGEDLIHLGAVKNLLINECDELRYLWERDSEAFNSLVSLQNLKVYNCKELISSSEKEKEVG...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkA04G121610
TK1151 IDTkA04G121610
OH-1004 IDLXL04_032524
Relationship / confidenceMulti Source To Oh1004 / Complex relationship
Protein identity (%)85.900
Protein coverage (%)TK1151 99.161 / OH-1004 37.539
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA04G121610
LocationChr04:31593825-31596850 (-)
DescriptionSimilar to RPPL1: Putative disease resistance RPP13-like protein 1
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At3g14470 Potential disease resistance protein. No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_032524 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0042742 defense response to bacterium Biological Process
GO:0050832 defense response to fungus Biological Process
GO:0051607 defense response to virus Biological Process
GO:0098542 defense response to other organism Biological Process
GO:0005576 extracellular region Cellular Component
GO:0005634 nucleus Cellular Component
GO:0004016 adenylate cyclase activity Molecular Function
GO:0005524 ATP binding Molecular Function
GO:0043531 ADP binding Molecular Function
KEGG gene cross-reference
ath:AT3G14460
ath:AT3G14470
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.661
Rank 1 · TkA04G121610 · TK1151
Cytoplasm0.329
Rank 2 · TkA04G121610 · TK1151
Cell membrane0.136
Rank 3 · TkA04G121610 · TK1151
Endoplasmic reticulum0.071
Rank 4 · TkA04G121610 · TK1151
Plastid0.027
Rank 5 · TkA04G121610 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF25019LRR_R13L1-DRL212-84 aa
PF12799LRR_420-36 aa
PF23598LRR_1421-115 aa
PF23247LRR_RPS249-154 aa
PF12799LRR_451-62 aa
PF13855LRR_853-68 aa
PF12799LRR_4106-113 aa
PF25019LRR_R13L1-DRL21135-170 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA04G121610PF25019LRR_R13L1-DRL212847.8e-2794.4
TkA04G121610PF12799LRR_420365.3e-0524.0
TkA04G121610PF23598LRR_14211156.5e-0729.1
TkA04G121610PF23247LRR_RPS2491542.3e-1764.1
TkA04G121610PF12799LRR_451625.3e-0524.0
TkA04G121610PF13855LRR_853680.02715.0
TkA04G121610PF12799LRR_41061135.3e-0524.0
TkA04G121610PF25019LRR_R13L1-DRL211351707.8e-2794.4
TkA04G121610PF23247LRR_RPS21362512.3e-1764.1
TkA04G121610PF12799LRR_41391545.3e-0524.0
TkA04G121610PF23598LRR_141552546.5e-0729.1
TkA04G121610PF13855LRR_81612160.02715.0
TkA04G121610PF25013LRR_Zer-11622420.003118.4
TkA04G121610PF12799LRR_41751955.3e-0524.0
TkA04G121610PF25019LRR_R13L1-DRL211842187.8e-2794.4
TkA04G121610PF25013LRR_Zer-11952700.003118.4

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
Q9LRR4Arabidopsis thalianasp|Q9LRR4|R13L1_ARATH Putative disease resistance RPP13-like protein 130.100%Swiss-ProtMedium

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