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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA04G119340
Reference: TK1151 Chr: Chr04 Coordinates: 31025624-31027392 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

1510 bp · TkA04G119340|TK1151|cDNA

CCAAGGTCGGTTAGGGCAGCGTATAAATTGAGTTCCAGAAGGTTATGGCCGCCATTAATTATAACCACGGTTTCTTCTGCTAAACGAAACAAGCGAAAAGTAGCGAAAATGGAGAACGGCAACCACAAAGAAGTCCCCGACAACGCCAATGAACATTGCCCAGGAACAGAAGCAGAAGATGCCGGAAAATCTGATGCTTGCGCAGGTTGCCCTAATCAAGAAGCTTGTGCTACTGCTCCCAAAGGCCCCGATCCAGATTT...

CDS

Download CDS FASTA

1161 bp · TkA04G119340|TK1151|CDS

CCAAGGTCGGTTAGGGCAGCGTATAAATTGAGTTCCAGAAGGTTATGGCCGCCATTAATTATAACCACGGTTTCTTCTGCTAAACGAAACAAGCGAAAAGTAGCGAAAATGGAGAACGGCAACCACAAAGAAGTCCCCGACAACGCCAATGAACATTGCCCAGGAACAGAAGCAGAAGATGCCGGAAAATCTGATGCTTGCGCAGGTTGCCCTAATCAAGAAGCTTGTGCTACTGCTCCCAAAGGCCCCGATCCAGATTT...

Protein

Download Protein FASTA

386 aa · TkA04G119340|TK1151|PROTEIN

PRSVRAAYKLSSRRLWPPLIITTVSSAKRNKRKVAKMENGNHKEVPDNANEHCPGTEAEDAGKSDACAGCPNQEACATAPKGPDPDLVAIAERMATVKHKILILSGKGGVGKSTFSAQLSFALAAMDHQVGLLDIDICGPSIPKMLGLEGQEIHQSNLGWSPVYVDSIGVMSIGFMLPDPDDAVIWRGPRKNGIIKQFLKDVYWGELDFLVVDAPPGTSDEHISIVQFLKETGIDGAIIVTTPQQVSLIDVRKEVSFCKK...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkA04G119340
TK1151 IDTkA04G119340
OH-1004 IDLXL04_000975
Relationship / confidenceMulti Source To Oh1004 / Complex relationship
Protein identity (%)35.900
Protein coverage (%)TK1151 70.466 / OH-1004 78.000
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA04G119340
LocationChr04:31025624-31027392 (-)
DescriptionSimilar to nubpl: Iron-sulfur protein NUBPL
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At5g50960 Component of the cytosolic iron-sulfur (Fe-S) protein assembly (CIA) machinery.
The essential cytosolic iron-sulfur protein Nbp35 acts without Cfd1 partner in the green lineage.2008 · DOI: 10.1074/jbc.m807303200
Arabidopsis cytosolic Nbp35 homodimer can assemble both [2Fe-2S] and [4Fe-4S] clusters in two distinct domains.2009 · DOI: 10.1016/j.bbrc.2008.11.138

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_000975 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0007005 mitochondrion organization Biological Process
GO:0016226 iron-sulfur cluster assembly Biological Process
GO:0032543 mitochondrial translation Biological Process
GO:0032981 mitochondrial respiratory chain complex I assembly Biological Process
GO:0005739 mitochondrion Cellular Component
GO:0005743 mitochondrial inner membrane Cellular Component
GO:0005759 mitochondrial matrix Cellular Component
GO:0005886 plasma membrane Cellular Component
GO:0009507 chloroplast Cellular Component
GO:0005524 ATP binding Molecular Function
GO:0046872 metal ion binding Molecular Function
GO:0051539 4 iron, 4 sulfur cluster binding Molecular Function
KEGG gene cross-reference
ath:AT4G19540
ddi:DDB_G0291193
hsa:80224
mmu:76826
yli:2907193
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Plastid0.674
Rank 1 · TkA04G119340 · TK1151
Mitochondrion0.160
Rank 2 · TkA04G119340 · TK1151
Cytoplasm0.151
Rank 3 · TkA04G119340 · TK1151
Nucleus0.072
Rank 4 · TkA04G119340 · TK1151
Peroxisome0.061
Rank 5 · TkA04G119340 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF03308MeaB13-30 aa
PF02367TsaE88-124 aa
PF00931NB-ARC92-120 aa
PF25199nSTAND_NTPase595-134 aa
PF03193RsgA_GTPase95-120 aa
PF10609ParA97-281 aa
PF20720nSTAND398-130 aa
PF13481AAA_2598-125 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA04G119340PF03308MeaB13300.03513.8
TkA04G119340PF02367TsaE881240.3611.5
TkA04G119340PF00931NB-ARC921200.1112.7
TkA04G119340PF25199nSTAND_NTPase5951340.003717.8
TkA04G119340PF03193RsgA_GTPase951200.02914.9
TkA04G119340PF10609ParA972813.9e-89299.0
TkA04G119340PF20720nSTAND3981300.001918.6
TkA04G119340PF13481AAA_25981250.005917.0
TkA04G119340PF02374ArsA_ATPase991366.1e-0832.9
TkA04G119340PF03308MeaB991380.03513.8
TkA04G119340PF13614AAA_311001372.6e-0628.1
TkA04G119340PF09140MipZ1002150.0001122.4
TkA04G119340PF13500AAA_261001240.005917.2
TkA04G119340PF00448SRP541001370.07513.4
TkA04G119340PF01583APS_kinase1001500.1512.8
TkA04G119340PF01656CbiA1012714.1e-1246.9

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
Q8H1Q2Arabidopsis thalianasp|Q8H1Q2|NBP35_ARATH Cytosolic Fe-S cluster assembly factor NBP3579.200%Swiss-ProtHigh

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