TkA04G118340 | RubberDandelionOmics

Gene overview

TkA04G118340

Reference: TK1151 Chr: Chr04 Coordinates: 30792871-30794287 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1281 bp · TkA04G118340|TK1151|cDNA

TTTCTCTCTCTATAACTACTCTCTCCCTCACACAGTAACAAACTGGACTCACATCACATATCACCCTTTCTTGTGAGCCCCACCCACCTGTGACCTGTCCCCTCTCCCTCCTTCCTCCGTCTACATTTCATCACCGTAACAGCCGTCGGAGTTGATGTAACAAACACAGCGATGTCAGAGAGCTTGCAGAACGATTACGAGCTCTGTGAAGAGCTCGGCCGAGGTCAGTTCGGGATCATATACCGTTGTTTTTCACGGAT...

CDS

Download CDS FASTA

837 bp · TkA04G118340|TK1151|CDS

ATGTCAGAGAGCTTGCAGAACGATTACGAGCTCTGTGAAGAGCTCGGCCGAGGTCAGTTCGGGATCATATACCGTTGTTTTTCACGGATTTCTGGTGAATCTTTTGCATGCAAATCGATTGACAAACGGCTCCTCTCCGACTCCACCGATCGGGAATGTATCGTGAAAGAACCGAAAATCCTCCGCGTTCTCGGCGGAAACGCTCATGTTACTCAGATTCACCGTATCTATGAAGATGAGAATTGGATCCATATGGTTAT...

Protein

Download Protein FASTA

278 aa · TkA04G118340|TK1151|PROTEIN

MSESLQNDYELCEELGRGQFGIIYRCFSRISGESFACKSIDKRLLSDSTDRECIVKEPKILRVLGGNAHVTQIHRIYEDENWIHMVIDLCEGPDLYERISKRGGAFSECEAVSIFSQLIESISYCHKLGIAHRDIKPDNVLFDSTGKLKLADFGSAEWFGMNERGSMTGVVGTPYYVAPEVLLGREYDEKVDVWSAGVILYILLGGVPPFYGETSVETFEAVVRGNLRFPTRIFRSVSPAAKDLLRKMLCKDASRRLSVQ...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA04G118340`
TK1151 ID	TkA04G118340
OH-1004 ID	LXL04_035666
Relationship / confidence	Multi Source To Oh1004 / Complex relationship
Protein identity (%)	100.000
Protein coverage (%)	TK1151 100.000 / OH-1004 100.000 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

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Basic Information and Functional Annotation

Gene ID TkA04G118340

Location Chr04:30792871-30794287 (-)

Description Similar to PPCK2: Phosphoenolpyruvate carboxylase kinase 2

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At3g04530`	Calcium-independent kinase involved in light-dependent phosphoenolpyruvate carboxylase phosphorylation.	No verified direct reference in this release
`At1g08650`	Calcium-independent kinase involved in light-dependent phosphoenolpyruvate carboxylase phosphorylation.	No verified direct reference in this release
`At1g76040`	May play a role in signal transduction pathways that involve calcium as a second messenger.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_035666 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0006468 protein phosphorylation Biological Process

GO:0009416 response to light stimulus Biological Process

GO:0016036 cellular response to phosphate starvation Biological Process

GO:0035556 intracellular signal transduction Biological Process

GO:0046898 response to cycloheximide Biological Process

GO:0005634 nucleus Cellular Component

GO:0005737 cytoplasm Cellular Component

GO:0005739 mitochondrion Cellular Component

GO:0005886 plasma membrane Cellular Component

GO:0004674 protein serine/threonine kinase activity Molecular Function

GO:0004683 calcium/calmodulin-dependent protein kinase activity Molecular Function

GO:0005509 calcium ion binding Molecular Function

KEGG gene cross-reference

ath:AT1G08650

ath:AT1G61950

ath:AT1G76040

ath:AT2G41860

ath:AT3G04530

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.608

Rank 1 · TkA04G118340 · TK1151

Cytoplasm0.589

Rank 2 · TkA04G118340 · TK1151

Cell membrane0.050

Rank 3 · TkA04G118340 · TK1151

Mitochondrion0.037

Rank 4 · TkA04G118340 · TK1151

Endoplasmic reticulum0.032

Rank 5 · TkA04G118340 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF13095FTA26-38 aa

PF00069Pkinase9-268 aa

PF07714PK_Tyr_Ser-Thr11-263 aa

PF12330Haspin_kinase23-155 aa

PF13095FTA250-79 aa

PF17667Pkinase_fungal108-195 aa

PF13095FTA2112-156 aa

PF14531Kinase-like114-249 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA04G118340	`PF13095`	FTA2	6	38	0.018	15.4
TkA04G118340	`PF00069`	Pkinase	9	268	8e-70	235.9
TkA04G118340	`PF07714`	PK_Tyr_Ser-Thr	11	263	9.8e-29	101.1
TkA04G118340	`PF12330`	Haspin_kinase	23	155	0.023	14.5
TkA04G118340	`PF13095`	FTA2	50	79	0.018	15.4
TkA04G118340	`PF17667`	Pkinase_fungal	108	195	0.026	14.0
TkA04G118340	`PF13095`	FTA2	112	156	0.018	15.4
TkA04G118340	`PF14531`	Kinase-like	114	249	0.00018	21.6
TkA04G118340	`PF03109`	ABC1	116	167	0.05	13.5
TkA04G118340	`PF01636`	APH	128	148	0.086	13.3

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q93VK0`	Arabidopsis thaliana	sp\|Q93VK0\|PPCK2_ARATH Phosphoenolpyruvate carboxylase kinase 2	51.300%	Swiss-Prot	High
`Q9SPK4`	Arabidopsis thaliana	sp\|Q9SPK4\|PPCK1_ARATH Phosphoenolpyruvate carboxylase kinase 1	50.400%	Swiss-Prot	High
`Q8RWL2`	Arabidopsis thaliana	sp\|Q8RWL2\|CDPKT_ARATH Calcium-dependent protein kinase 29	44.700%	Swiss-Prot	Medium

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