TkA04G116990 | RubberDandelionOmics

Gene overview

TkA04G116990

Reference: TK1151 Chr: Chr04 Coordinates: 30435671-30437445 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1034 bp · TkA04G116990|TK1151|cDNA

AAACCGGAAAGGGTGGGTAATTTGGTAAATTGGAAGCGACCAATTGTGATAGCGAGGAAGAGATGAAACCTTCCTTCCCAAAGAGTTTAAATGGCAGTATGCCGATTTCCCTTCTGCCTCTGTAATCCCCCATTACAGCAAGTGCTAGCGAATCCCACTTTCTTCTTCCCTCAATTCCCTCCTTACTCCAAAAGATCTGCGCCACTTCCACTCACTCTTCCCAATCGCCCGCGTCCGATTGTAACCTGTGCTTCCCCGTC...

CDS

Download CDS FASTA

471 bp · TkA04G116990|TK1151|CDS

ATGGGTACAGAAGAAACGTCGGTATCTGTCTCATCAACTCTTCCAAAAAGGGTTTTTTCAGCATCAAGGCTCGATGTACCGGACTCATGGCAGATGCCTCAGGGTGGAGTTGATGAAGGTGAAGATCCAAGAGCGGCAGCCATCAGGGAATTAAGAGAAGAAACAGGTGTTACATCAGCCGAAATTCTTATGGAGGCACCACACTGGTTAACATATGATTTCCCTCCAAAAGTTCGTGAAAAGCTGAACCGCCAATGGGG...

Protein

Download Protein FASTA

156 aa · TkA04G116990|TK1151|PROTEIN

MGTEETSVSVSSTLPKRVFSASRLDVPDSWQMPQGGVDEGEDPRAAAIRELREETGVTSAEILMEAPHWLTYDFPPKVREKLNRQWGSNWKGQAQKWFLFKFTGKDEEVNLLGDGTEKAEFGEWSWMSPEQVIDRAVDFKKPVYKEVMGAFSPHLQ

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA04G116990`
TK1151 ID	TkA04G116990
OH-1004 ID	LXL04_035642
Relationship / confidence	Rbh Below Probable Coverage Or Synteny Threshold / Review
Protein identity (%)	100.000
Protein coverage (%)	TK1151 89.103 / OH-1004 60.435 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID TkA04G116990

Location Chr04:30435671-30437445 (-)

Description Similar to NUDT26: Nudix hydrolase 26, chloroplastic

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At3g10620`	Mediates the hydrolysis of some nucleoside diphosphate derivatives.	Molecular characterization of organelle-type Nudix hydrolases in Arabidopsis.2008 · DOI: 10.1104/pp.108.128413
`At5g06340`	Mediates the hydrolysis of some nucleoside diphosphate derivatives.	Molecular characterization of organelle-type Nudix hydrolases in Arabidopsis.2008 · DOI: 10.1104/pp.108.128413
`At1g30110`	May hydrolyze diadenosine tetraphosphate (Ap₄A), a signal involved in DNA replication and repair.	A diadenosine 5',5''-P1P4 tetraphosphate (Ap4A) hydrolase from Arabidopsis thaliana that is activated preferentially by Mn2+ ions.2008 · DOI: 10.18388/abp.2008_3173

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_035642 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0006753 nucleoside phosphate metabolic process Biological Process

GO:0015967 diadenosine tetraphosphate catabolic process Biological Process

GO:0019693 ribose phosphate metabolic process Biological Process

GO:0005634 nucleus Cellular Component

GO:0009507 chloroplast Cellular Component

GO:0004081 bis(5'-nucleosyl)-tetraphosphatase (asymmetrical) activity Molecular Function

GO:0008893 guanosine-3',5'-bis(diphosphate) 3'-diphosphatase activity Molecular Function

GO:0034432 bis(5'-adenosyl)-pentaphosphatase activity Molecular Function

GO:0046872 metal ion binding Molecular Function

KEGG gene cross-reference

ath:AT1G30110

ath:AT3G10620

ath:AT5G06340

rsk:RSKD131_2305

rsp:RSP_0931

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.448

Rank 1 · TkA04G116990 · TK1151

Nucleus0.228

Rank 2 · TkA04G116990 · TK1151

Endoplasmic reticulum0.132

Rank 3 · TkA04G116990 · TK1151

Mitochondrion0.125

Rank 4 · TkA04G116990 · TK1151

Peroxisome0.124

Rank 5 · TkA04G116990 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00293NUDIX23-146 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA04G116990	`PF00293`	NUDIX	23	146	3.9e-21	76.2

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q9CAF2`	Arabidopsis thaliana	sp\|Q9CAF2\|NUD26_ARATH Nudix hydrolase 26, chloroplastic	78.000%	Swiss-Prot	High
`Q9FNH4`	Arabidopsis thaliana	sp\|Q9FNH4\|NUD27_ARATH Nudix hydrolase 27, chloroplastic	67.600%	Swiss-Prot	High
`Q9C6Z2`	Arabidopsis thaliana	sp\|Q9C6Z2\|NUD25_ARATH Nudix hydrolase 25	55.400%	Swiss-Prot	High

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