Gene Card
Gene overview
cDNA / CDS / Protein Sequences
1413 bp · TkA04G116350|TK1151|cDNA
AAGATATCGGCACACTTTTGGTTTGGGTAACAAAATCACACCATTACAGACTTTGGGTCCAAGCTCACCGGCAAAATGTCTGTGATGTACTCCCTCACTTGCCCAACGATTTTCCCCGCTAAAAGAACCCTCACCAGCTCCTTCATCTCTTTCTTCCATCGGAACCCACCATGTGTTACTCTACTTCGTCCAAACGTTTCCTTTGCTTCTTACGCAGGAGCCTCGGATTTGGATGACGAATTACAAGCCGAGGAAGTTGC...
1338 bp · TkA04G116350|TK1151|CDS
ATGTCTGTGATGTACTCCCTCACTTGCCCAACGATTTTCCCCGCTAAAAGAACCCTCACCAGCTCCTTCATCTCTTTCTTCCATCGGAACCCACCATGTGTTACTCTACTTCGTCCAAACGTTTCCTTTGCTTCTTACGCAGGAGCCTCGGATTTGGATGACGAATTACAAGCCGAGGAAGTTGCTTTATCCGGCGGCCGACAAATAACCAATTACACCGGCGTTCAGCTCGAAGAAAGAGTTGAAGAGGTTGGAAAGAT...
Protein
Download Protein FASTA446 aa · TkA04G116350|TK1151|PROTEIN
MSVMYSLTCPTIFPAKRTLTSSFISFFHRNPPCVTLLRPNVSFASYAGASDLDDELQAEEVALSGGRQITNYTGVQLEERVEEVGKIRLDTWISTRINGISRARVQSSIRSGLVSVNHRVVVKSSHMIRHGDKVECTISELQPLKAESEDIPLDIVYEDEHVLVVNKPAHMVVHPAPGNTTGTLVNAILHHCSLPTPSFHDHELLSDSDELSDTDLDESTLNHSFGTNETSIRPGIVHRLDKGTSGLLVVAKDEHSHAHL...
Flanking Sequence Download
Sequence orientation and download details
Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.
ID Mapping
| Input ID | TkA04G116350 |
|---|---|
| TK1151 ID | TkA04G116350 |
| OH-1004 ID | LXL04_035681 |
| Relationship / confidence | Sequence Supported Annotation Or Model Conflict / Review |
| Protein identity (%) | 99.500 |
| Protein coverage (%) | TK1151 98.879 / OH-1004 49.164Coverage and evidenceCoverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation. |
| Source version | TK1151 / GWHBCHF00000000 |
SNP / Indel variants and carrier samplesCRA009020 · TK1151
Expand to load variant records for this gene.
Basic Information and Functional Annotation
| Gene ID | TkA04G116350 | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Location | Chr04:30206139-30209543 (+) | ||||||||||||
| Description | Similar to At1g76050: RNA pseudouridine synthase 2, chloroplastic | ||||||||||||
| Arabidopsis / Rice Reference Genes and Papers |
Download references for this gene Arabidopsis
Rice
| ||||||||||||
| Functional annotation source | View annotation sourcesFunctional annotation source: OH1004 · | ||||||||||||
| GO annotations (OH1004 source) | GO:0000455 enzyme-directed rRNA pseudouridine synthesis Biological Process GO:0002239 response to oomycetes Biological Process GO:0005739 mitochondrion Cellular Component GO:0005829 cytosol Cellular Component GO:0005886 plasma membrane Cellular Component GO:0009507 chloroplast Cellular Component GO:0003723 RNA binding Molecular Function GO:0004497 monooxygenase activity Molecular Function GO:0009982 pseudouridine synthase activity Molecular Function GO:0071949 FAD binding Molecular Function GO:0120159 rRNA pseudouridine synthase activity Molecular Function | ||||||||||||
| KEGG gene cross-reference | ath:AT1G76050 ath:AT4G38540 ath:AT5G05320 bsu:BSU15460 dosa:Os06g0717400 These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene. |
Gene expression
View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.
Data sources and gene correspondence
Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.
Subcellular Localization Top 5
Computational predictions or homology annotations below do not replace localization experiments.
LocPro · Direct prediction · Computational prediction, not experimental localization
Predicted Functional Domains
Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.
PF01479S488-134 aaPF00849PseudoU_synth_2161-351 aa| Gene ID | Domain ID | Domain Name | Start aa | End aa | E-value | Score |
|---|---|---|---|---|---|---|
| TkA04G116350 | PF01479 | S4 | 88 | 134 | 4.7e-06 | 27.0 |
| TkA04G116350 | PF00849 | PseudoU_synth_2 | 161 | 351 | 4e-29 | 102.5 |
Arabidopsis / Rice Protein Homology
Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.