TkA04G115940 | RubberDandelionOmics

Gene overview

TkA04G115940

Reference: TK1151 Chr: Chr04 Coordinates: 30111250-30113110 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1228 bp · TkA04G115940|TK1151|cDNA

TCCATCACAACAAGAAACTGAAACATATCTTGTGCTAAGAAATGGCAGCCATCAATCTTTCTTCTTCACTACTTTTAGGGATTTTTATGGTGATCATTTTTGATGGTAGTAATGCATTAAGTTCTAATTTTTACGATCAAACATGTCCTATGGCTGAAGCAACTGTTACAAGTGCTGTCAAGAAAGCCATGTTGAATGATAAAACAGTTCCAGCTGCACTTCTAAGAATGCAATTTCACGATTGCTTCATCAGGGGATGT...

CDS

Download CDS FASTA

963 bp · TkA04G115940|TK1151|CDS

ATGGCAGCCATCAATCTTTCTTCTTCACTACTTTTAGGGATTTTTATGGTGATCATTTTTGATGGTAGTAATGCATTAAGTTCTAATTTTTACGATCAAACATGTCCTATGGCTGAAGCAACTGTTACAAGTGCTGTCAAGAAAGCCATGTTGAATGATAAAACAGTTCCAGCTGCACTTCTAAGAATGCAATTTCACGATTGCTTCATCAGGGGATGTGATGGTTCGGTGTTGTTGAACTCAACAAGAAAGAACAAAGC...

Protein

Download Protein FASTA

320 aa · TkA04G115940|TK1151|PROTEIN

MAAINLSSSLLLGIFMVIIFDGSNALSSNFYDQTCPMAEATVTSAVKKAMLNDKTVPAALLRMQFHDCFIRGCDGSVLLNSTRKNKAEKDGPPNISLHAFYVIDNAKKALESMCLGTVSCADIVALAARDAVHLSGGPSWIVPKGRKDGRVSKASETKQLPAPVFNISQLQQSFSKRGLSIEDLVALSGGHTLGFAHCSSFQNRIHNFATTQDIDPSMHQSFAASLRNVCPMHNKVRNAGANLDSTPTLFDNRYYKLLLE...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA04G115940`
TK1151 ID	TkA04G115940
OH-1004 ID	LXL04_035686
Relationship / confidence	Sequence Supported Annotation Or Model Conflict / Review
Protein identity (%)	98.700
Protein coverage (%)	TK1151 97.188 / OH-1004 57.274 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID TkA04G115940

Location Chr04:30111250-30113110 (-)

Description Similar to PER64: Peroxidase 64

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At5g42180`	Removal of H(2)O(2), oxidation of toxic reductants, biosynthesis and degradation of lignin, suberization, auxin catabolism, response to environmental stresses such as wounding, pathogen attack and oxidative stress.	No verified direct reference in this release
`At5g51890`	Removal of H(2)O(2), oxidation of toxic reductants, biosynthesis and degradation of lignin, suberization, auxin catabolism, response to environmental stresses such as wounding, pathogen attack and oxidative stress.	No verified direct reference in this release
`At3g21770`	Removal of H(2)O(2), oxidation of toxic reductants, biosynthesis and degradation of lignin, suberization, auxin catabolism, response to environmental stresses such as wounding, pathogen attack and oxidative stress.	No verified direct reference in this release
`At1g05260`	Removal of H(2)O(2), oxidation of toxic reductants, biosynthesis and degradation of lignin, suberization, auxin catabolism, response to environmental stresses such as wounding, pathogen attack and oxidative stress.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_035686 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0006950 response to stress Biological Process

GO:0006979 response to oxidative stress Biological Process

GO:0009269 response to desiccation Biological Process

GO:0009409 response to cold Biological Process

GO:0042538 hyperosmotic salinity response Biological Process

GO:0042744 hydrogen peroxide catabolic process Biological Process

GO:0005576 extracellular region Cellular Component

GO:0005634 nucleus Cellular Component

GO:0005737 cytoplasm Cellular Component

GO:0005783 endoplasmic reticulum Cellular Component

GO:0009505 plant-type cell wall Cellular Component

GO:0009506 plasmodesma Cellular Component

KEGG gene cross-reference

ath:AT1G05260

ath:AT3G21770

ath:AT4G11290

ath:AT5G42180

ath:AT5G51890

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Extracellular0.379

Rank 1 · TkA04G115940 · TK1151

Lysosome / Vacuole0.215

Rank 2 · TkA04G115940 · TK1151

Cell membrane0.143

Rank 3 · TkA04G115940 · TK1151

Cytoplasm0.105

Rank 4 · TkA04G115940 · TK1151

Endoplasmic reticulum0.078

Rank 5 · TkA04G115940 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00141peroxidase42-287 aa

PF07206Baculo_LEF-10100-134 aa

PF07206Baculo_LEF-10150-160 aa

PF07206Baculo_LEF-10205-225 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA04G115940	`PF00141`	peroxidase	42	287	1e-83	281.5
TkA04G115940	`PF07206`	Baculo_LEF-10	100	134	0.0011	19.5
TkA04G115940	`PF07206`	Baculo_LEF-10	150	160	0.0011	19.5
TkA04G115940	`PF07206`	Baculo_LEF-10	205	225	0.0011	19.5

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q43872`	Arabidopsis thaliana	sp\|Q43872\|PER64_ARATH Peroxidase 64	71.400%	Swiss-Prot	High
`Q9LT91`	Arabidopsis thaliana	sp\|Q9LT91\|PER66_ARATH Peroxidase 66	56.200%	Swiss-Prot	High
`Q9LSY7`	Arabidopsis thaliana	sp\|Q9LSY7\|PER30_ARATH Peroxidase 30	42.000%	Swiss-Prot	Medium
`O23044`	Arabidopsis thaliana	sp\|O23044\|PER3_ARATH Peroxidase 3	45.800%	Swiss-Prot	Medium

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