TkA04G113530 | RubberDandelionOmics

Gene overview

TkA04G113530

Reference: TK1151 Chr: Chr04 Coordinates: 29455203-29457299 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1298 bp · TkA04G113530|TK1151|cDNA

CTCAAGCTCACTAAAAATAATTTCTCCATGGTTCAGTTTCAAATGGCTAGTCTTTGGTTGCTTTTAGGATTGTATTTTGCAGCAGGAGTTAGTGCTGAACCCAATAAGACCCACGTTGAAGCCAATGTGACCCATGCAGCCCCGATAGTGCCTAGTGCTAGCCCAAAAGGAAAACAAGTTCGACCATTTTTTGTGTTTGGTGACTCTTTAGTTGATAATGGTAACAATAACTATTTGATTACGACTGCAAAGGCTGATAA...

CDS

Download CDS FASTA

1170 bp · TkA04G113530|TK1151|CDS

ATGGTTCAGTTTCAAATGGCTAGTCTTTGGTTGCTTTTAGGATTGTATTTTGCAGCAGGAGTTAGTGCTGAACCCAATAAGACCCACGTTGAAGCCAATGTGACCCATGCAGCCCCGATAGTGCCTAGTGCTAGCCCAAAAGGAAAACAAGTTCGACCATTTTTTGTGTTTGGTGACTCTTTAGTTGATAATGGTAACAATAACTATTTGATTACGACTGCAAAGGCTGATAAGCCACCTTATGGCATCGATTCTCCTAC...

Protein

Download Protein FASTA

389 aa · TkA04G113530|TK1151|PROTEIN

MVQFQMASLWLLLGLYFAAGVSAEPNKTHVEANVTHAAPIVPSASPKGKQVRPFFVFGDSLVDNGNNNYLITTAKADKPPYGIDSPTHQPTGRFSNGLNIPDVISEYIGSEPTLPYLSPELKDEKLIVGANFASAGIGILNDTGFQFINVLRMPLQLEYFKEYQQRLSLTVGEKRAKQLVNQALVLVSLGGNDFVNNYFLYPFSVRSQEASLPDYVRYLISEYRKILTKLYEMGARRVIVIGSGPLGCAPAERAQHSVTG...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA04G113530`
TK1151 ID	TkA04G113530
OH-1004 ID	LXL04_021525
Relationship / confidence	Non Reciprocal Best Hit / Complex relationship
Protein identity (%)	66.100
Protein coverage (%)	TK1151 98.201 / OH-1004 99.457 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

Open Full ID Mapping

SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID TkA04G113530

Location Chr04:29455203-29457299 (+)

Description Similar to LTL1: GDSL esterase/lipase LTL1

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At5g33370`	GDSL esterase/lipase At5g33370.	No verified direct reference in this release
`At3g04290`	Involved in the mechanisms of salt tolerance.	Overexpression of Arabidopsis thaliana LTL1, a salt-induced gene encoding a GDSL-motif lipase, increases salt tolerance in yeast and transgenic plants.2006 · DOI: 10.1111/j.1365-3040.2006.01565.x
`At5g18430`	GDSL esterase/lipase At5g18430.	No verified direct reference in this release
`At4g28780`	GDSL esterase/lipase At4g28780.	No verified direct reference in this release
`At4g16230`	GDSL esterase/lipase At4g16230.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_021525 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0009751 response to salicylic acid Biological Process

GO:0010226 response to lithium ion Biological Process

GO:0016042 lipid catabolic process Biological Process

GO:0042538 hyperosmotic salinity response Biological Process

GO:0160062 cutin-based cuticle development Biological Process

GO:0005576 extracellular region Cellular Component

GO:0009507 chloroplast Cellular Component

GO:0016788 hydrolase activity, acting on ester bonds Molecular Function

KEGG gene cross-reference

ath:AT2G23540

ath:AT3G04290

ath:AT4G28780

ath:AT5G18430

ath:AT5G33370

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Extracellular0.537

Rank 1 · TkA04G113530 · TK1151

Lysosome / Vacuole0.125

Rank 2 · TkA04G113530 · TK1151

Cell membrane0.099

Rank 3 · TkA04G113530 · TK1151

Cytoplasm0.093

Rank 4 · TkA04G113530 · TK1151

Endoplasmic reticulum0.093

Rank 5 · TkA04G113530 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00657Lipase_GDSL55-365 aa

PF13472Lipase_GDSL_256-65 aa

PF13472Lipase_GDSL_2179-270 aa

PF00696AA_kinase220-309 aa

PF13472Lipase_GDSL_2344-360 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA04G113530	`PF00657`	Lipase_GDSL	55	365	2.8e-33	116.5
TkA04G113530	`PF13472`	Lipase_GDSL_2	56	65	0.0088	17.3
TkA04G113530	`PF13472`	Lipase_GDSL_2	179	270	0.0088	17.3
TkA04G113530	`PF00696`	AA_kinase	220	309	0.33	11.4
TkA04G113530	`PF13472`	Lipase_GDSL_2	344	360	0.0088	17.3

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q8LB81`	Arabidopsis thaliana	sp\|Q8LB81\|GDL79_ARATH GDSL esterase/lipase At5g33370	64.400%	Swiss-Prot	High
`Q9M8Y5`	Arabidopsis thaliana	sp\|Q9M8Y5\|LTL1_ARATH GDSL esterase/lipase LTL1	64.100%	Swiss-Prot	High
`Q5PNZ0`	Arabidopsis thaliana	sp\|Q5PNZ0\|GDL77_ARATH GDSL esterase/lipase At5g18430	62.800%	Swiss-Prot	High
`Q9SVU5`	Arabidopsis thaliana	sp\|Q9SVU5\|GDL67_ARATH GDSL esterase/lipase At4g28780	63.800%	Swiss-Prot	High
`O23470`	Arabidopsis thaliana	sp\|O23470\|GDL64_ARATH GDSL esterase/lipase At4g16230	38.000%	Swiss-Prot	Medium

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