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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA04G107460
Reference: TK1151 Chr: Chr04 Coordinates: 27934789-27935778 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

912 bp · TkA04G107460|TK1151|cDNA

ATGGTATGTTTTCCTACAAGAGCACATCTTAGATTAATGCCAAAACCGCTTTCTAGCAGCCCCCGTCGACTCCAATACCAACAAAACCACCTCCGGAAGTCGATCAGAGGCGGTGGCCATGCAAGTCCTTATCTACGGTCTGGACCCATTAAGCAGATGAGTCATTCAGACAACTTATCAGAGCCAACTTCTCCGAAAGTAACCTGTGCTGGTCAAATTAAGGTCCGACCCACCACAAGATCCTGCAAGAACTGGCAAAC...

CDS

Download CDS FASTA

912 bp · TkA04G107460|TK1151|CDS

ATGGTATGTTTTCCTACAAGAGCACATCTTAGATTAATGCCAAAACCGCTTTCTAGCAGCCCCCGTCGACTCCAATACCAACAAAACCACCTCCGGAAGTCGATCAGAGGCGGTGGCCATGCAAGTCCTTATCTACGGTCTGGACCCATTAAGCAGATGAGTCATTCAGACAACTTATCAGAGCCAACTTCTCCGAAAGTAACCTGTGCTGGTCAAATTAAGGTCCGACCCACCACAAGATCCTGCAAGAACTGGCAAAC...

Protein

Download Protein FASTA

303 aa · TkA04G107460|TK1151|PROTEIN

MVCFPTRAHLRLMPKPLSSSPRRLQYQQNHLRKSIRGGGHASPYLRSGPIKQMSHSDNLSEPTSPKVTCAGQIKVRPTTRSCKNWQTVMEEIERLHDNRKKKSKIMQFLTCLRRIKFDFHCLGGFSHVDITSDDEDEDDQDDDSNDKRINQDQRQDIDHHEDYDHEESKTVFSKWFMVLQENKDCGVFEKEEKGLKSEETEDLPCLPPANALFLMRCRSAPAKSWMEEKQEEEEEEEEQEEQNDVNDDDDKKIEKTENKR...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkA04G107460
TK1151 IDTkA04G107460
OH-1004 IDLXL04_035803
Relationship / confidenceRbh High Identity Coverage Synteny / Strict
Protein identity (%)98.400
Protein coverage (%)TK1151 100.000 / OH-1004 95.611
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA04G107460
LocationChr04:27934789-27935778 (+)
DescriptionProtein of unknown function
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

No hit for this species in the current source table.

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_035803 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)No functional description available
KEGG gene cross-referenceNo functional description available
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cell membrane0.494
Rank 1 · TkA04G107460 · TK1151
Nucleus0.406
Rank 2 · TkA04G107460 · TK1151
Cytoplasm0.309
Rank 3 · TkA04G107460 · TK1151
Endoplasmic reticulum0.057
Rank 4 · TkA04G107460 · TK1151
Plastid0.027
Rank 5 · TkA04G107460 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF30939At1g7607035-110 aa
PF09184PPP4R297-167 aa
PF11704Folliculin129-129 aa
PF08658Rad54_N129-183 aa
PF03286Pox_Ag35131-170 aa
PF06213CobT131-167 aa
PF17875RPA43_OB131-174 aa
PF15713PTPRCAP132-173 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA04G107460PF30939At1g76070351105.7e-0523.9
TkA04G107460PF09184PPP4R2971670.5810.4
TkA04G107460PF11704Folliculin1291293.48.2
TkA04G107460PF08658Rad54_N1291839.07.2
TkA04G107460PF03286Pox_Ag351311703.48.4
TkA04G107460PF06213CobT1311676.56.9
TkA04G107460PF17875RPA43_OB1311747.47.7
TkA04G107460PF15713PTPRCAP1321730.05714.6
TkA04G107460PF06524NOA361321660.4610.5
TkA04G107460PF17110TFB61331683.58.1
TkA04G107460PF05132RNA_pol_Rpc41341670.6910.9
TkA04G107460PF30939At1g760701361465.7e-0523.9
TkA04G107460PF29841PTP3_M1381640.5210.7
TkA04G107460PF24871Piezo_TM1-241391598.35.4
TkA04G107460PF24871Piezo_TM1-242132698.35.4
TkA04G107460PF15713PTPRCAP2182620.05714.6

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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No result was found for this query.

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