TkA04G104890 | RubberDandelionOmics

Gene overview

TkA04G104890

Reference: TK1151 Chr: Chr04 Coordinates: 27307189-27310879 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

2418 bp · TkA04G104890|TK1151|cDNA

GTAGACTTAGACTTTCTTTCTTTAAAATCCAAACTTTGACCTTTAGCCAGACTACTCAAAACTTATATAATTAACTCATTTCTTTCAATTCCCACAAGCCTTTGCTTTCAGTTATTTGAAAGCATCCATGGCCAAAATTTGATATTCAAAAAATAACAATCAAGTTCTTTGATTAAATTCGTCAATGTCTGATCAAGAAGACAAAGATCTCGACATGGAAACTAAAAGTTTGACTTCTGTGGACACTCAAAGACCGAATG...

CDS

Download CDS FASTA

1974 bp · TkA04G104890|TK1151|CDS

ATGTCTGATCAAGAAGACAAAGATCTCGACATGGAAACTAAAAGTTTGACTTCTGTGGACACTCAAAGACCGAATGTACCTTACATTCACAAGATCGGTGTCCCTCCGAAACAAAAAATATTCAAGGAATTCAAATCCACGGTGAAAGAAACATTCTTTTCAGATGATCCTCTGCGACCTTTCAAAGATCAACCAAAGTCCAGAAAGGTCGTACTTGGCCTTGAAGCAATCTTCCCTATTCTTGAATGGGGAAGAAGTTA...

Protein

Download Protein FASTA

657 aa · TkA04G104890|TK1151|PROTEIN

MSDQEDKDLDMETKSLTSVDTQRPNVPYIHKIGVPPKQKIFKEFKSTVKETFFSDDPLRPFKDQPKSRKVVLGLEAIFPILEWGRSYNIKKFRGDLIAGLTIASLCIPQDIGYSKLANLSPQYGLYSSFVPPLIYAFMGSSRDIAIGPVAVVSLLIGTLVRNEFDPDKDPGEYLRLVFTATFFAGITQATLGVFRLGFLIDFLSHAAVVGFMGGAAITIALQQLKGFLGIPGKHFTKDTDIISVMKSVFGAAHHWWNWQT...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA04G104890`
TK1151 ID	TkA04G104890
OH-1004 ID	LXL04_035828
Relationship / confidence	Rbh High Identity Coverage Synteny / Strict
Protein identity (%)	95.100
Protein coverage (%)	TK1151 100.000 / OH-1004 100.000 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

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Basic Information and Functional Annotation

Gene ID TkA04G104890

Location Chr04:27307189-27310879 (+)

Description Similar to SULTR1;3: Sulfate transporter 1.3

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At1g22150`	May act as a high-affinity H⁺/sulfate symporter mediating sulfate loading into sieve tubes.	Phloem-localizing sulfate transporter, Sultr1;3, mediates re-distribution of sulfur from source to sink organs in Arabidopsis.2003 · DOI: 10.1104/pp.014712
`At1g78000`	May act as a high-affinity H⁺/sulfate symporter mediating sulfate uptake by plant roots.	Two distinct high-affinity sulfate transporters with different inducibilities mediate uptake of sulfate in Arabidopsis roots.2002 · DOI: 10.1046/j.0960-7412.2001.01231.x Selenate-resistant mutants of Arabidopsis thaliana identify Sultr1;2, a sulfate transporter required for efficient transport of sulfate into roots.2002 · DOI: 10.1046/j.0960-7412.2001.01232.x
`At4g08620`	May act as a high-affinity H⁺/sulfate symporter mediating root sulfate uptake under low-sulfur conditions.	The roles of three functional sulphate transporters involved in uptake and translocation of sulphate in Arabidopsis thaliana.2000 · DOI: 10.1046/j.1365-313x.2000.00768.x Two distinct high-affinity sulfate transporters with different inducibilities mediate uptake of sulfate in Arabidopsis roots.2002 · DOI: 10.1046/j.0960-7412.2001.01231.x

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_035828 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0009970 cellular response to sulfate starvation Biological Process

GO:0055085 transmembrane transport Biological Process

GO:1902358 sulfate transmembrane transport Biological Process

GO:0005886 plasma membrane Cellular Component

GO:0009507 chloroplast Cellular Component

GO:0016020 membrane Cellular Component

GO:0008271 secondary active sulfate transmembrane transporter activity Molecular Function

GO:0015116 sulfate transmembrane transporter activity Molecular Function

GO:0015293 symporter activity Molecular Function

GO:0022857 transmembrane transporter activity Molecular Function

KEGG gene cross-reference

ath:AT1G22150

ath:AT1G78000

ath:AT4G08620

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cell membrane0.828

Rank 1 · TkA04G104890 · TK1151

Cytoplasm0.121

Rank 2 · TkA04G104890 · TK1151

Endoplasmic reticulum0.053

Rank 3 · TkA04G104890 · TK1151

Lysosome / Vacuole0.045

Rank 4 · TkA04G104890 · TK1151

Mitochondrion0.038

Rank 5 · TkA04G104890 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00916Sulfate_transp92-475 aa

PF07178TraL194-225 aa

PF22436PilE_C206-266 aa

PF04161Arv1262-272 aa

PF26273Gly_zipper341-355 aa

PF04161Arv1409-473 aa

PF01740STAS453-476 aa

PF07178TraL454-505 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA04G104890	`PF00916`	Sulfate_transp	92	475	2.9e-140	468.1
TkA04G104890	`PF07178`	TraL	194	225	3.4	8.8
TkA04G104890	`PF22436`	PilE_C	206	266	0.07	14.0
TkA04G104890	`PF04161`	Arv1	262	272	1.5	9.7
TkA04G104890	`PF26273`	Gly_zipper	341	355	0.38	11.2
TkA04G104890	`PF04161`	Arv1	409	473	1.5	9.7
TkA04G104890	`PF01740`	STAS	453	476	7e-29	100.4
TkA04G104890	`PF07178`	TraL	454	505	3.4	8.8
TkA04G104890	`PF26273`	Gly_zipper	473	496	0.38	11.2
TkA04G104890	`PF01740`	STAS	527	645	7e-29	100.4
TkA04G104890	`PF13466`	STAS_2	578	633	0.0053	17.7
TkA04G104890	`PF22436`	PilE_C	638	652	0.07	14.0

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q9FEP7`	Arabidopsis thaliana	sp\|Q9FEP7\|SUT13_ARATH Sulfate transporter 1.3	74.000%	Swiss-Prot	High
`Q9MAX3`	Arabidopsis thaliana	sp\|Q9MAX3\|SUT12_ARATH Sulfate transporter 1.2	76.400%	Swiss-Prot	High
`Q9SAY1`	Arabidopsis thaliana	sp\|Q9SAY1\|SUT11_ARATH Sulfate transporter 1.1	72.700%	Swiss-Prot	High

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