TkA04G102960 | RubberDandelionOmics

Gene overview

TkA04G102960

Reference: TK1151 Chr: Chr04 Coordinates: 26806006-26807328 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1009 bp · TkA04G102960|TK1151|cDNA

AACTCCCAATATCTCTCATCCACCTCGTCTTCACATCTTATCCACCAGATTCCACTCCATCTTCTATTTCTATTTCTTCATACTAATTTCAATTCATCGTCATTCTTTCAACCATCTCTACAAGCAGATCGTAGATCGATGGCTTTCACAGTCTCCACAAGCTTCCTCCAACCACTCGAATTATCCAAATCCTCGCAGTTCGGATCCAAATTAAAGGCTACCAGCCCCAGTATCGTGTGTTCCGGATCCACAGAAGATAA...

CDS

Download CDS FASTA

822 bp · TkA04G102960|TK1151|CDS

AACTCCCAATATCTCTCATCCACCTCGTCTTCACATCTTATCCACCAGATTCCACTCCATCTTCTATTTCTATTTCTTCATACTAATTTCAATTCATCGTCATTCTTTCAACCATCTCTACAAGCAGATCGTAGATCGATGGCTTTCACAGTCTCCACAAGCTTCCTCCAACCACTCGAATTATCCAAATCCTCGCAGTTCGGATCCAAATTAAAGGCTACCAGCCCCAGTATCGTGTGTTCCGGATCCACAGAAGATAA...

Protein

Download Protein FASTA

273 aa · TkA04G102960|TK1151|PROTEIN

NSQYLSSTSSSHLIHQIPLHLLFLFLHTNFNSSSFFQPSLQADRRSMAFTVSTSFLQPLELSKSSQFGSKLKATSPSIVCSGSTEDKTKEKGSLKAFSAALALSSILISSTVPALPASADISGLTPCKDSKQFAKREKQSLKKLESSLKLYAPDSAPALAIKATMEKTKRRFDNYGKQGLLCGSDGLPHLIVSGDQRHWGEFITPGILFLYIAGWIGWVGRSYLIAIRDEKKPTQKEIIIDVPLASRLVFRGFSWLVAAY...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA04G102960`
TK1151 ID	TkA04G102960
OH-1004 ID	LXL04_035845
Relationship / confidence	Non Reciprocal Best Hit / Complex relationship
Protein identity (%)	99.100
Protein coverage (%)	TK1151 83.150 / OH-1004 100.000 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

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Basic Information and Functional Annotation

Gene ID TkA04G102960

Location Chr04:26806006-26807328 (-)

Description Similar to PSAF: Photosystem I reaction center subunit III, chloroplastic

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At1g31330`	Participates in efficiency of electron transfer from plastocyanin to P700 (or cytochrome c553 in algae and cyanobacteria).	Down-regulation of the PSI-F subunit of photosystem I (PSI) in Arabidopsis thaliana. The PSI-F subunit is essential for photoautotrophic growth and contributes to antenna function.2000 · DOI: 10.1074/jbc.m002933200

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_035845 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0015979 photosynthesis Biological Process

GO:0005634 nucleus Cellular Component

GO:0009507 chloroplast Cellular Component

GO:0009534 chloroplast thylakoid Cellular Component

GO:0009535 chloroplast thylakoid membrane Cellular Component

GO:0009538 photosystem I reaction center Cellular Component

GO:0009543 chloroplast thylakoid lumen Cellular Component

GO:0009579 thylakoid Cellular Component

GO:0009941 chloroplast envelope Cellular Component

GO:0010287 plastoglobule Cellular Component

GO:0003729 mRNA binding Molecular Function

GO:0019904 protein domain specific binding Molecular Function

KEGG gene cross-reference

ath:AT1G31330

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Plastid0.982

Rank 1 · TkA04G102960 · TK1151

Mitochondrion0.022

Rank 2 · TkA04G102960 · TK1151

Nucleus0.014

Rank 3 · TkA04G102960 · TK1151

Cytoplasm0.013

Rank 4 · TkA04G102960 · TK1151

Cell membrane0.009

Rank 5 · TkA04G102960 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF02507PSI_PsaF107-271 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA04G102960	`PF02507`	PSI_PsaF	107	271	1.2e-77	260.4

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q9SHE8`	Arabidopsis thaliana	sp\|Q9SHE8\|PSAF_ARATH Photosystem I reaction center subunit III, chloroplastic	77.000%	Swiss-Prot	High

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