TkA04G100420 | RubberDandelionOmics

Gene overview

TkA04G100420

Reference: TK1151 Chr: Chr04 Coordinates: 26126715-26131104 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

2427 bp · TkA04G100420|TK1151|cDNA

AGGCTTTCCTCAGACGCCACCTCCATGAATCACGAACAGCATCATCATCCTCGGTCAAAGAATCACGGCCCTGAGGTCTTCTGGCCGAAAATCGTTATCCGAAAATGGCTAAATCGTGCCTCTAAAAGTTCCGATTACACCGCCGATCCGGAAGACGAAGATAGCACATACGATTCCGAAGGCGAAGAAGACTCCTACGACTCCCCAAAAGAACTGCGACTGAAAGTTAAACAAGGAGATGATTTCCAAACAGATCCCAG...

CDS

Download CDS FASTA

1941 bp · TkA04G100420|TK1151|CDS

ATGAATCACGAACAGCATCATCATCCTCGGTCAAAGAATCACGGCCCTGAGGTCTTCTGGCCGAAAATCGTTATCCGAAAATGGCTAAATCGTGCCTCTAAAAGTTCCGATTACACCGCCGATCCGGAAGACGAAGATAGCACATACGATTCCGAAGGCGAAGAAGACTCCTACGACTCCCCAAAAGAACTGCGACTGAAAGTTAAACAAGGAGATGATTTCCAAACAGATCCCAGTGGAGGTTTTCCTAGGTCAAGAAG...

Protein

Download Protein FASTA

646 aa · TkA04G100420|TK1151|PROTEIN

MNHEQHHHPRSKNHGPEVFWPKIVIRKWLNRASKSSDYTADPEDEDSTYDSEGEEDSYDSPKELRLKVKQGDDFQTDPSGGFPRSRRRKSETFRAQYIDAKELKVSVSTWNVGGKLPPEDLDISNLLDVDNPSDIYVIGFQEIIPLNAGNIFGAEDNRPVPIWENAIRKTLTKILPENTKFKCYSNPSSPSRFKPSADAPDIEDEVALETDSEEGEEEEIHPFDDLIDVQAGNFNLTRQTSDYFDDALPPTTLPKRIERL...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA04G100420`
TK1151 ID	TkA04G100420
OH-1004 ID	LXL04_035880
Relationship / confidence	Multi Source To Oh1004 / Complex relationship
Protein identity (%)	100.000
Protein coverage (%)	TK1151 99.381 / OH-1004 92.775 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

Open Full ID Mapping

SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID TkA04G100420

Location Chr04:26126715-26131104 (-)

Description Similar to IP5P3: Type IV inositol polyphosphate 5-phosphatase 3

Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At1g71710`	Has phosphatase activity toward PtdIns(4,5)P2 and PtdIns(3,4,5)P3.	No verified direct reference in this release
`At1g34120`	Has phosphatase activity toward Ins(1,4,5)P3 and Ins(1,3,4,5)P4, but not toward Ins(1,4)P2, Ins(1)P.	No verified direct reference in this release
`At4g18010`	Has phosphatase activity toward Ins(1,4,5)P3 and Ins(1,3,4,5)P4.	No verified direct reference in this release
`At3g63240`	Type I inositol polyphosphate 5-phosphatase 4.	No verified direct reference in this release
`At1g05470`	May have phosphatase activity toward PtdIns(4,5)P₂ and PtdIns(3,4,5)P₃.	Genetic regulation of vascular tissue patterning in Arabidopsis.1999 · DOI: 10.1105/tpc.11.11.2123 Cotyledon vascular pattern2-mediated inositol (1,4,5) triphosphate signal transduction is essential for closed venation patterns of Arabidopsis foliar organs.2004 · DOI: 10.1105/tpc.021030 CVP2- and CVL1-mediated phosphoinositide signaling as a regulator of the ARF GAP SFC/VAN3 in establishment of foliar vein patterns.2009 · DOI: 10.1111/j.1365-313x.2009.03920.x Primary root protophloem differentiation requires balanced phosphatidylinositol-4,5-biphosphate levels and systemically affects root branching.2015 · DOI: 10.1242/dev.118364

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_035880 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0009737 response to abscisic acid Biological Process

GO:0009738 abscisic acid-activated signaling pathway Biological Process

GO:0009845 seed germination Biological Process

GO:0032957 inositol trisphosphate metabolic process Biological Process

GO:0043647 inositol phosphate metabolic process Biological Process

GO:0046856 phosphatidylinositol dephosphorylation Biological Process

GO:0090351 seedling development Biological Process

GO:0005737 cytoplasm Cellular Component

GO:0005794 Golgi apparatus Cellular Component

GO:0004439 phosphatidylinositol-4,5-bisphosphate 5-phosphatase activity Molecular Function

GO:0004445 inositol-polyphosphate 5-phosphatase activity Molecular Function

GO:0034485 phosphatidylinositol-3,4,5-trisphosphate 5-phosphatase activity Molecular Function

KEGG gene cross-reference

ath:AT1G34120

ath:AT1G71710

ath:AT3G63240

ath:AT4G18010

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.388

Rank 1 · TkA04G100420 · TK1151

Cell membrane0.266

Rank 2 · TkA04G100420 · TK1151

Nucleus0.264

Rank 3 · TkA04G100420 · TK1151

Golgi apparatus0.079

Rank 4 · TkA04G100420 · TK1151

Plastid0.072

Rank 5 · TkA04G100420 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF02724CDC4535-93 aa

PF22669Exo_endo_phos2109-182 aa

PF03372Exo_endo_phos109-155 aa

PF02724CDC45111-215 aa

PF22669Exo_endo_phos2335-595 aa

PF03372Exo_endo_phos472-590 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA04G100420	`PF02724`	CDC45	35	93	0.12	11.4
TkA04G100420	`PF22669`	Exo_endo_phos2	109	182	1.5e-73	248.6
TkA04G100420	`PF03372`	Exo_endo_phos	109	155	6.6e-06	26.8
TkA04G100420	`PF02724`	CDC45	111	215	0.12	11.4
TkA04G100420	`PF22669`	Exo_endo_phos2	335	595	1.5e-73	248.6
TkA04G100420	`PF03372`	Exo_endo_phos	472	590	6.6e-06	26.8

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q8H0Z6`	Arabidopsis thaliana	sp\|Q8H0Z6\|IP5P3_ARATH Type IV inositol polyphosphate 5-phosphatase 3	52.700%	Swiss-Prot	High
`Q84MA2`	Arabidopsis thaliana	sp\|Q84MA2\|IP5P1_ARATH Type I inositol polyphosphate 5-phosphatase 1	45.900%	Swiss-Prot	Medium
`Q9FUR2`	Arabidopsis thaliana	sp\|Q9FUR2\|IP5P2_ARATH Type I inositol polyphosphate 5-phosphatase 2	42.500%	Swiss-Prot	Medium
`Q8GTS0`	Arabidopsis thaliana	sp\|Q8GTS0\|IP5P4_ARATH Type I inositol polyphosphate 5-phosphatase 4	37.100%	Swiss-Prot	Medium
`Q9LR47`	Arabidopsis thaliana	sp\|Q9LR47\|IP5P6_ARATH Type IV inositol polyphosphate 5-phosphatase 6	36.100%	Swiss-Prot	Medium

JBrowse

View in Genome Browser

Gene Card