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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA04G099480
Reference: TK1151 Chr: Chr04 Coordinates: 25924001-25926469 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

1904 bp · TkA04G099480|TK1151|cDNA

AACACTACATATACCCCTCCACCCTCCTCTCAACTTCATCACCAGAATCTCATAACAGATTCACACACCAAAAAGCAACACAAAGTCAAAACAACATTTTATCCATCAAAAACCCAAATCATTAATAACAAAATGATAATGGATGAAAAAGCTGCATCAAACTACCAACAAGGCTTTGAAATCTCCGGCGATTTCACTTCTCAACACCCCACCAAATCCTTAGACGACGACGGCCGTCCCAAAAGGACAGGGACACTTGT...

CDS

Download CDS FASTA

1296 bp · TkA04G099480|TK1151|CDS

AACACTACATATACCCCTCCACCCTCCTCTCAACTTCATCACCAGAATCTCATAACAGATTCACACACCAAAAAGCAACACAAAGTCAAAACAACATTTTATCCATCAAAAACCCAAATCATTAATAACAAAATGATAATGGATGAAAAAGCTGCATCAAACTACCAACAAGGCTTTGAAATCTCCGGCGATTTCACTTCTCAACACCCCACCAAATCCTTAGACGACGACGGCCGTCCCAAAAGGACAGGGACACTTGT...

Protein

Download Protein FASTA

431 aa · TkA04G099480|TK1151|PROTEIN

NTTYTPPPSSQLHHQNLITDSHTKKQHKVKTTFYPSKTQIINNKMIMDEKAASNYQQGFEISGDFTSQHPTKSLDDDGRPKRTGTLVSASAHIITAVIGSGVLALAWSTAQLGWVAGPTVLFLFSFVTYYCSCLLASCYRTGDPVTGKRNYTYSEAVRSNLGGFKFKICGFIQYFNLAGTTIGYTIAASISMMAIKRSSCFHEKGHDSPCGINGTPFMLLFGAVEILLSQIPNFHEISWLSMVAAVMSFTYSAIGLGLGI...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

Download Gene (CDS) Download Protein

ID Mapping

Input IDTkA04G099480
TK1151 IDTkA04G099480
OH-1004 IDLXL04_035885
Relationship / confidenceMulti Source To Oh1004 / Complex relationship
Protein identity (%)100.000
Protein coverage (%)TK1151 88.167 / OH-1004 78.512
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA04G099480
LocationChr04:25924001-25926469 (-)
DescriptionSimilar to AAP2: Amino acid permease 2
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At5g63850 Amino acid-proton symporter.
Substrate specificity and expression profile of amino acid transporters (AAPs) in Arabidopsis.1995 · DOI: 10.1074/jbc.270.27.16315
At1g77380 Amino acid-proton symporter.
Substrate specificity and expression profile of amino acid transporters (AAPs) in Arabidopsis.1995 · DOI: 10.1074/jbc.270.27.16315
At5g09220 Amino acid-proton symporter.
Substrate specificity and expression profile of amino acid transporters (AAPs) in Arabidopsis.1995 · DOI: 10.1074/jbc.270.27.16315
Differential expression of two related amino acid transporters with differing substrate specificity in Arabidopsis thaliana.1993 · DOI: 10.1046/j.1365-313x.1993.04060993.x
At1g44100 Amino acid-proton symporter.
Root uptake of cationic amino acids by Arabidopsis depends on functional expression of amino acid permease 5.2008 · DOI: 10.1111/j.1469-8137.2008.02589.x
Substrate specificity and expression profile of amino acid transporters (AAPs) in Arabidopsis.1995 · DOI: 10.1074/jbc.270.27.16315
At5g49630 Amino acid-proton symporter. No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_035885 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0003333 amino acid transmembrane transport Biological Process
GO:0006865 amino acid transport Biological Process
GO:0006952 defense response Biological Process
GO:0009624 response to nematode Biological Process
GO:0015800 acidic amino acid transport Biological Process
GO:0015802 basic amino acid transport Biological Process
GO:0015804 neutral amino acid transport Biological Process
GO:0015808 L-alanine transport Biological Process
GO:0043090 amino acid import Biological Process
GO:0098712 L-glutamate import across plasma membrane Biological Process
GO:0110126 phloem loading Biological Process
GO:0005886 plasma membrane Cellular Component
KEGG gene cross-reference
ath:AT1G44100
ath:AT1G58360
ath:AT1G77380
ath:AT5G09220
ath:AT5G63850
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cell membrane0.652
Rank 1 · TkA04G099480 · TK1151
Lysosome / Vacuole0.163
Rank 2 · TkA04G099480 · TK1151
Endoplasmic reticulum0.111
Rank 3 · TkA04G099480 · TK1151
Cytoplasm0.106
Rank 4 · TkA04G099480 · TK1151
Golgi apparatus0.058
Rank 5 · TkA04G099480 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF13962PGG55-73 aa
PF01490Aa_trans83-404 aa
PF13962PGG111-111 aa
PF15957Comm114-143 aa
PF19616DUF6121153-197 aa
PF13962PGG236-252 aa
PF13962PGG281-346 aa
PF12771SusD-like_2283-348 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA04G099480PF13962PGG55733.98.0
TkA04G099480PF01490Aa_trans834041.2e-93314.7
TkA04G099480PF13962PGG1111113.98.0
TkA04G099480PF15957Comm1141430.4811.4
TkA04G099480PF19616DUF61211531970.001519.1
TkA04G099480PF13962PGG2362523.98.0
TkA04G099480PF13962PGG2813463.98.0
TkA04G099480PF12771SusD-like_22833480.310.7
TkA04G099480PF19616DUF61213043820.001519.1
TkA04G099480PF15957Comm3303500.4811.4
TkA04G099480PF25744T4_Y13H3694200.2711.9

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
Q9FN04Arabidopsis thalianasp|Q9FN04|AAP4_ARATH Amino acid permease 472.300%Swiss-ProtHigh
Q39134Arabidopsis thalianasp|Q39134|AAP3_ARATH Amino acid permease 367.900%Swiss-ProtHigh
Q38967Arabidopsis thalianasp|Q38967|AAP2_ARATH Amino acid permease 267.700%Swiss-ProtHigh
Q8GUM3Arabidopsis thalianasp|Q8GUM3|AAP5_ARATH Amino acid permease 563.400%Swiss-ProtHigh
P92934Arabidopsis thalianasp|P92934|AAP6_ARATH Amino acid permease 664.800%Swiss-ProtHigh

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