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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA04G096780
Reference: TK1151 Chr: Chr04 Coordinates: 25215405-25215977 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

573 bp · TkA04G096780|TK1151|cDNA

ATGTGCAAAATCGGCAACAGTTTTAGCGAACACACACCCAACAAATTGCAAACCCTTGTGGAGATCGATATCGACTCATGTGACGATTTAATTACGTTTCCGGCGATGTTGTGCAAATTAGCCGGTCTTAGAAAACTCAGCGTCACTAATTGCCTCGAATTGAGTTCCCTTTCTGAAGAATTTGGAAAAAGCCTAACGAATTTGGAAGTTTTGCGGCTTGCGTCATGCTCAAAGCTTGCAACGTTACCTGAATCAATCGG...

CDS

Download CDS FASTA

573 bp · TkA04G096780|TK1151|CDS

ATGTGCAAAATCGGCAACAGTTTTAGCGAACACACACCCAACAAATTGCAAACCCTTGTGGAGATCGATATCGACTCATGTGACGATTTAATTACGTTTCCGGCGATGTTGTGCAAATTAGCCGGTCTTAGAAAACTCAGCGTCACTAATTGCCTCGAATTGAGTTCCCTTTCTGAAGAATTTGGAAAAAGCCTAACGAATTTGGAAGTTTTGCGGCTTGCGTCATGCTCAAAGCTTGCAACGTTACCTGAATCAATCGG...

Protein

Download Protein FASTA

190 aa · TkA04G096780|TK1151|PROTEIN

MCKIGNSFSEHTPNKLQTLVEIDIDSCDDLITFPAMLCKLAGLRKLSVTNCLELSSLSEEFGKSLTNLEVLRLASCSKLATLPESIGNMQKLKVIDLNDCLNLQELPADIGELGCLRMIHMRGCTGLSVLPSSVKELSPLEVVCNEEISFLWKGMTNVVVQLVEEDKLATFWTITKAYSRELLLDMQIKM

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkA04G096780
TK1151 IDTkA04G096780
OH-1004 IDLXL04_032162
Relationship / confidenceNon Reciprocal Best Hit / Complex relationship
Protein identity (%)97.900
Protein coverage (%)TK1151 99.474 / OH-1004 75.000
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA04G096780
LocationChr04:25215405-25215977 (-)
DescriptionSimilar to At5g66900: Probable disease resistance protein At5g66900
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

No hit for this species in the current source table.

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_032162 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0006952 defense response Biological Process
GO:0042742 defense response to bacterium Biological Process
GO:0098542 defense response to other organism Biological Process
GO:0005634 nucleus Cellular Component
GO:0005829 cytosol Cellular Component
GO:0009507 chloroplast Cellular Component
GO:0012505 endomembrane system Cellular Component
GO:0048046 apoplast Cellular Component
GO:0005524 ATP binding Molecular Function
GO:0043531 ADP binding Molecular Function
KEGG gene cross-reference
ath:AT4G33300
ath:AT5G66890
ath:AT5G66900
ath:AT5G66910
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.441
Rank 1 · TkA04G096780 · TK1151
Cytoplasm0.348
Rank 2 · TkA04G096780 · TK1151
Cell membrane0.181
Rank 3 · TkA04G096780 · TK1151
Endoplasmic reticulum0.088
Rank 4 · TkA04G096780 · TK1151
Plastid0.041
Rank 5 · TkA04G096780 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF25019LRR_R13L1-DRL215-51 aa
PF00560LRR_15-19 aa
PF25013LRR_Zer-111-50 aa
PF23247LRR_RPS212-134 aa
PF12799LRR_413-27 aa
PF13855LRR_814-22 aa
PF23598LRR_1415-71 aa
PF23211LRR_LRWD115-50 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA04G096780PF25019LRR_R13L1-DRL215514.5e-1040.2
TkA04G096780PF00560LRR_15191.1e-0525.3
TkA04G096780PF25013LRR_Zer-111500.00120.0
TkA04G096780PF23247LRR_RPS2121349.9e-0523.1
TkA04G096780PF12799LRR_413276.8e-0730.1
TkA04G096780PF13855LRR_814221.9e-0628.3
TkA04G096780PF23598LRR_1415713.8e-1246.3
TkA04G096780PF23211LRR_LRWD115500.1712.3
TkA04G096780PF23286LRR_1318586.7e-0729.9
TkA04G096780PF00560LRR_119401.1e-0525.3
TkA04G096780PF23632SAP_RNF34_RFFL19270.6510.4
TkA04G096780PF25013LRR_Zer-136990.00120.0
TkA04G096780PF23952LRR_EndoS371060.0003521.5
TkA04G096780PF23598LRR_14391483.8e-1246.3
TkA04G096780PF13855LRR_8421001.9e-0628.3
TkA04G096780PF12799LRR_443836.8e-0730.1

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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