TkA04G096320 | RubberDandelionOmics

Gene overview

TkA04G096320

Reference: TK1151 Chr: Chr04 Coordinates: 25077282-25080015 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1759 bp · TkA04G096320|TK1151|cDNA

CGGAGAGAATATAAAGAGGAAAAGGAATAAAGAAAAGCCAAACCACATTTCAGAGAATAAAGGGCTAAAAACAAACACATAATAGAGAGAGATTCTTGAATAATCGTTAATATCAGGGAAAATGGGTTCGGATACAGGTCTAGAGAACTCGAAGCGGTTTCTGTCGACATGGTTGATCGGAGGTTTGGTGGCCGGTCTGTCGGTTATGGGGTTATGCGCTGCTTGGCCGGAGCTCTCCCCTCTTAGTATTGTCGGGATGA...

CDS

Download CDS FASTA

1263 bp · TkA04G096320|TK1151|CDS

ATGGGTTCGGATACAGGTCTAGAGAACTCGAAGCGGTTTCTGTCGACATGGTTGATCGGAGGTTTGGTGGCCGGTCTGTCGGTTATGGGGTTATGCGCTGCTTGGCCGGAGCTCTCCCCTCTTAGTATTGTCGGGATGAAGAAGAAGAAGAAGCGACCCATTCGTGTATACATGGATGGCTGCTTCGATATGATGCATTACGGCCACTGCAACGCACTCCGGCAAGCTCGTGCTCTCGGAGATCAATTGATTGTCGGCGT...

Protein

Download Protein FASTA

420 aa · TkA04G096320|TK1151|PROTEIN

MGSDTGLENSKRFLSTWLIGGLVAGLSVMGLCAAWPELSPLSIVGMKKKKKRPIRVYMDGCFDMMHYGHCNALRQARALGDQLIVGVVSDAEITINKGPPVTPLHERMIMVSAVKWVDEVIPDAPYAITEEFMRKLFDEYNIDYIIHGDDPCILPDGTDAYALAKKAGRYKQIKRTEGVSSTDIVGRMLLCVRERTSGDSPSHASLQRQFSHGHGQKKFDDGGSGSGTRVSHFLPTSRRIVQFSNEKAAGPDARIVYIDG...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA04G096320`
TK1151 ID	TkA04G096320
OH-1004 ID	LXL04_035925
Relationship / confidence	Rbh High Identity Coverage Synteny / Strict
Protein identity (%)	100.000
Protein coverage (%)	TK1151 100.000 / OH-1004 100.000 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

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Basic Information and Functional Annotation

Gene ID TkA04G096320

Location Chr04:25077282-25080015 (-)

Description Similar to PECT1: Ethanolamine-phosphate cytidylyltransferase

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At2g38670`	Plays an important role in the biosynthesis of the phospholipid phosphatidylethanolamine.	Defects in CTP:PHOSPHORYLETHANOLAMINE CYTIDYLYLTRANSFERASE affect embryonic and postembryonic development in Arabidopsis.2006 · DOI: 10.1105/tpc.106.040840

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_035925 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0006646 phosphatidylethanolamine biosynthetic process Biological Process

GO:0008654 phospholipid biosynthetic process Biological Process

GO:0010119 regulation of stomatal movement Biological Process

GO:0005634 nucleus Cellular Component

GO:0005737 cytoplasm Cellular Component

GO:0005739 mitochondrion Cellular Component

GO:0005741 mitochondrial outer membrane Cellular Component

GO:0005789 endoplasmic reticulum membrane Cellular Component

GO:0005794 Golgi apparatus Cellular Component

GO:0031966 mitochondrial membrane Cellular Component

GO:0045335 phagocytic vesicle Cellular Component

GO:0004306 ethanolamine-phosphate cytidylyltransferase activity Molecular Function

KEGG gene cross-reference

ath:AT2G38670

bta:510274

ddi:DDB_G0270298

hsa:5833

rno:89841

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Mitochondrion0.687

Rank 1 · TkA04G096320 · TK1151

Cytoplasm0.130

Rank 2 · TkA04G096320 · TK1151

Peroxisome0.125

Rank 3 · TkA04G096320 · TK1151

Nucleus0.097

Rank 4 · TkA04G096320 · TK1151

Plastid0.048

Rank 5 · TkA04G096320 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF01467CTP_transf_like57-186 aa

PF06574FAD_syn60-82 aa

PF06574FAD_syn129-173 aa

PF01467CTP_transf_like257-387 aa

PF06574FAD_syn260-278 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA04G096320	`PF01467`	CTP_transf_like	57	186	2.9e-47	160.9
TkA04G096320	`PF06574`	FAD_syn	60	82	0.00051	20.6
TkA04G096320	`PF06574`	FAD_syn	129	173	0.00051	20.6
TkA04G096320	`PF01467`	CTP_transf_like	257	387	2.9e-47	160.9
TkA04G096320	`PF06574`	FAD_syn	260	278	0.00051	20.6

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q9ZVI9`	Arabidopsis thaliana	sp\|Q9ZVI9\|PECT1_ARATH Ethanolamine-phosphate cytidylyltransferase	78.700%	Swiss-Prot	High

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