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How to use this page

Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA04G093290
Reference: TK1151 Chr: Chr04 Coordinates: 24305043-24305498 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

456 bp · TkA04G093290|TK1151|cDNA

ATGATCGAAGATAAGCCACTAAAGTATAGGATAACCTATTTCAGTAATCATACTTGCAATAATTTACAAAGACCTCCTCCAATCATATTGCATTCTCCATATCCTAGAGAGAATTCCATGCTCCTTAACTTTGAAACAAAGGAGCTCATAAACAAGAAACAACTTGGCCCCAATTTTCCATCCGTGAAACAAGAACTTAATGATGGGGTTCCTTCTCTAAGCAGCCTTGGACACAACCAGTCTACACCTTGTAATTACAA...

CDS

Download CDS FASTA

456 bp · TkA04G093290|TK1151|CDS

ATGATCGAAGATAAGCCACTAAAGTATAGGATAACCTATTTCAGTAATCATACTTGCAATAATTTACAAAGACCTCCTCCAATCATATTGCATTCTCCATATCCTAGAGAGAATTCCATGCTCCTTAACTTTGAAACAAAGGAGCTCATAAACAAGAAACAACTTGGCCCCAATTTTCCATCCGTGAAACAAGAACTTAATGATGGGGTTCCTTCTCTAAGCAGCCTTGGACACAACCAGTCTACACCTTGTAATTACAA...

Protein

Download Protein FASTA

151 aa · TkA04G093290|TK1151|PROTEIN

MIEDKPLKYRITYFSNHTCNNLQRPPPIILHSPYPRENSMLLNFETKELINKKQLGPNFPSVKQELNDGVPSLSSLGHNQSTPCNYNSPWDPSTHVSQAPKESLSLMSSWLDREEMVSPPAYSGLDHGDIISSSSYSSMAGTLGYHMNPML

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

Download Gene (CDS) Download Protein

ID Mapping

Input IDTkA04G093290
TK1151 IDTkA04G093290
OH-1004 IDLXL04_035950
Relationship / confidenceSequence Supported Annotation Or Model Conflict / Review
Protein identity (%)100.000
Protein coverage (%)TK1151 100.000 / OH-1004 47.040
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA04G093290
LocationChr04:24305043-24305498 (-)
DescriptionSimilar to WRKY70: Probable WRKY transcription factor 70
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

No hit for this species in the current source table.

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_035950 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0000302 response to reactive oxygen species Biological Process
GO:0002215 defense response to nematode Biological Process
GO:0002229 defense response to oomycetes Biological Process
GO:0006351 DNA-templated transcription Biological Process
GO:0006355 regulation of DNA-templated transcription Biological Process
GO:0006952 defense response Biological Process
GO:0006970 response to osmotic stress Biological Process
GO:0009409 response to cold Biological Process
GO:0009617 response to bacterium Biological Process
GO:0009624 response to nematode Biological Process
GO:0009625 response to insect Biological Process
GO:0009682 induced systemic resistance Biological Process
KEGG gene cross-reference
ath:AT2G46400
ath:AT3G56400
dosa:Os05g0322900
osa:4338413
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.867
Rank 1 · TkA04G093290 · TK1151
Cytoplasm0.240
Rank 2 · TkA04G093290 · TK1151
Cell membrane0.032
Rank 3 · TkA04G093290 · TK1151
Mitochondrion0.025
Rank 4 · TkA04G093290 · TK1151
Endoplasmic reticulum0.022
Rank 5 · TkA04G093290 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

No result was found for this query.

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

No result was found for this query.

JBrowse

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