TkA04G083190 | RubberDandelionOmics

Gene overview

TkA04G083190

Reference: TK1151 Chr: Chr04 Coordinates: 21774178-21776479 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1795 bp · TkA04G083190|TK1151|cDNA

TGGTTAAATTATGCCTTATATAATTTCTTAAATACTCAAGTACTATAGTGGAACCATAAATAGATTGAGTTCTATCCTTCTTATTTCTCTTCCCCACCCTTTTCCATAGAACTAAAGTCACTTTATATACCTTACAGTACTCTCCCTCTCTCTCACTCTTTGTGTGTTTGCATTCGTGAGGCTCCAGAGAAATGGCTAAGAAGCACTACTCCATTGACTATGGAACATGAAGACCATGTTCCATTGCAGCGTAGTCATGT...

CDS

Download CDS FASTA

810 bp · TkA04G083190|TK1151|CDS

ATGGGATTCTATGATGTGCATGCTCCATTCATCAATCCCAGGAAAAAGAAGCTTAACATGGGAGGTCTAAATCGTACCTTGTATAGCTTCAAGTCCATTGAGTACAATATCTCAATCGACTACTACTGGGCTCCGATGCTAGTTGAATCTAATGGCGATGATCCATCAAACCATCGCCTTGACCATCGAACTATTAGAATCAATGCCATAGAGAAACACGCTAGGCATTGGGTAGATGCCGATATACTCGTCTTTAATAC...

Protein

Download Protein FASTA

269 aa · TkA04G083190|TK1151|PROTEIN

MGFYDVHAPFINPRKKKLNMGGLNRTLYSFKSIEYNISIDYYWAPMLVESNGDDPSNHRLDHRTIRINAIEKHARHWVDADILVFNTYLWWRLPIIKFLKSAGSLLGGPNQVYDEVNNVHAYKKVLEVWSKWVHIHIDPSKTKMFFMGLTATHSSAKDWGGKKYGTCYKETEPVMDEGFWESGTNPKMLHILESSLRKLKAKGVNVQLINITQLTQCRKDAHPTVHRKLWVPFTDAQKKNPERASDCTHWCLPGVPDIWN...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA04G083190`
TK1151 ID	TkA04G083190
OH-1004 ID	LXL04_036030
Relationship / confidence	Sequence Supported Annotation Or Model Conflict / Review
Protein identity (%)	98.800
Protein coverage (%)	TK1151 95.539 / OH-1004 55.870 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

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Basic Information and Functional Annotation

Gene ID TkA04G083190

Location Chr04:21774178-21776479 (+)

Description Similar to TBL34: Protein trichome birefringence-like 34

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At2g38320`	May act as a bridging protein that binds pectin and other cell wall polysaccharides.	No verified direct reference in this release
`At5g01620`	May act as a bridging protein that binds pectin and other cell wall polysaccharides.	No verified direct reference in this release

Rice

Reference gene ID	Possible function	Papers / DOI
`Os03g0817500`	Xylan acetyltransferase required for 2-O- and 3-O-monoacetylation of xylosyl residues in xylan.	Biochemical characterization of rice xylan O-acetyltransferases.2018 · DOI: 10.1007/s00425-018-2882-1
`Os12g0106300`	Xylan acetyltransferase required for 2-O- and 3-O-monoacetylation of xylosyl residues in xylan.	Two Trichome Birefringence-Like Proteins Mediate Xylan Acetylation, Which Is Essential for Leaf Blight Resistance in Rice.2017 · DOI: 10.1104/pp.16.01618
`Os11g0107000`	Xylan acetyltransferase required for 2-O- and 3-O-monoacetylation of xylosyl residues in xylan.	Two Trichome Birefringence-Like Proteins Mediate Xylan Acetylation, Which Is Essential for Leaf Blight Resistance in Rice.2017 · DOI: 10.1104/pp.16.01618

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_036030 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0006952 defense response Biological Process

GO:0045492 xylan biosynthetic process Biological Process

GO:0000139 Golgi membrane Cellular Component

GO:0005634 nucleus Cellular Component

GO:0005794 Golgi apparatus Cellular Component

GO:0016020 membrane Cellular Component

GO:0016413 O-acetyltransferase activity Molecular Function

GO:1990538 xylan O-acetyltransferase activity Molecular Function

KEGG gene cross-reference

ath:AT2G38320

ath:AT5G01620

dosa:Os03g0817500

dosa:Os11g0107000

osa:4349561

osa:4351267

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Extracellular0.312

Rank 1 · TkA04G083190 · TK1151

Golgi apparatus0.175

Rank 2 · TkA04G083190 · TK1151

Endoplasmic reticulum0.120

Rank 3 · TkA04G083190 · TK1151

Lysosome / Vacuole0.077

Rank 4 · TkA04G083190 · TK1151

Cell membrane0.059

Rank 5 · TkA04G083190 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF13839PC-Esterase24-265 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA04G083190	`PF13839`	PC-Esterase	24	265	4.7e-62	211.2

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`O80919`	Arabidopsis thaliana	sp\|O80919\|TBL34_ARATH Protein trichome birefringence-like 34	48.500%	Swiss-Prot	Medium
`Q8RXQ1`	Arabidopsis thaliana	sp\|Q8RXQ1\|TBL35_ARATH Protein trichome birefringence-like 35	41.400%	Swiss-Prot	Medium
`Q84TV3`	Oryza sativa subsp. japonica	sp\|Q84TV3\|XOATE_ORYSJ Xylan O-acetyltransferase 14	43.900%	Swiss-Prot	Medium
`Q2QYU2`	Oryza sativa subsp. japonica	sp\|Q2QYU2\|XOATD_ORYSJ Xylan O-acetyltransferase 13	45.500%	Swiss-Prot	Medium
`Q2RBL8`	Oryza sativa subsp. japonica	sp\|Q2RBL8\|XOATC_ORYSJ Xylan O-acetyltransferase 12	45.100%	Swiss-Prot	Medium

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