TkA04G081450 | RubberDandelionOmics

Gene overview

TkA04G081450

Reference: TK1151 Chr: Chr04 Coordinates: 21386426-21389601 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1854 bp · TkA04G081450|TK1151|cDNA

ATGAGTACCGAAGTCAGCTTTCAGATTTTGTTGATGGGGTTGTACGTGATCATGTTTGGTGTTATATCCACATCGGTTTCTGGTCAATGTCAAATCGACCAGCAATCGATTTTAATCCGATTGAAGAAGGAGTTACACTTCAGTTCTTCATTATCAACAAAACTAGTGTCTTGGGACCCAAATGTGACAGATTGTTGCACCTGGGTAGGAGTTAATTGCAGCATCGGGGGTGAAGTTATAGTTTGGAGCTTGTCAAACTG...

CDS

Download CDS FASTA

1854 bp · TkA04G081450|TK1151|CDS

ATGAGTACCGAAGTCAGCTTTCAGATTTTGTTGATGGGGTTGTACGTGATCATGTTTGGTGTTATATCCACATCGGTTTCTGGTCAATGTCAAATCGACCAGCAATCGATTTTAATCCGATTGAAGAAGGAGTTACACTTCAGTTCTTCATTATCAACAAAACTAGTGTCTTGGGACCCAAATGTGACAGATTGTTGCACCTGGGTAGGAGTTAATTGCAGCATCGGGGGTGAAGTTATAGTTTGGAGCTTGTCAAACTG...

Protein

Download Protein FASTA

617 aa · TkA04G081450|TK1151|PROTEIN

MSTEVSFQILLMGLYVIMFGVISTSVSGQCQIDQQSILIRLKKELHFSSSLSTKLVSWDPNVTDCCTWVGVNCSIGGEVIVWSLSNCQLSGPFDDFLGKLKSLSVIRLAQNNLNTSVPDFFGDFRNLTVLYLGACNLGGTFPTEVLQLQNLKILDLSSNTNLHGSLIDFPANGSLQSLVLSNTDFSGEISESIGNLKSLPWIELSNSNFSGVIPNSMENLTQSLYLDMSSNKFTGQIPSFQLCKNLTHIDLSRNNLSGTI...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA04G081450`
TK1151 ID	TkA04G081450
OH-1004 ID	LXL04_036049
Relationship / confidence	Non Reciprocal Best Hit / Complex relationship
Protein identity (%)	45.100
Protein coverage (%)	TK1151 70.989 / OH-1004 58.554 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

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Basic Information and Functional Annotation

Gene ID TkA04G081450

Location Chr04:21386426-21389601 (+)

Description Similar to RLP7: Receptor-like protein 7

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At1g74180`	Receptor-like protein 14.	No verified direct reference in this release
`At1g47890`	Receptor-like protein 7.	No verified direct reference in this release
`At5g27060`	Receptor-like protein 53.	No verified direct reference in this release
`At3g11080`	Receptor-like protein 35.	No verified direct reference in this release
`UniProt: Q9ZUK7`	Receptor-like protein 18.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_036049 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0006952 defense response Biological Process

GO:0007165 signal transduction Biological Process

GO:0009791 post-embryonic development Biological Process

GO:0051707 response to other organism Biological Process

GO:0005576 extracellular region Cellular Component

GO:0005886 plasma membrane Cellular Component

KEGG gene cross-reference

ath:AT1G45616

ath:AT1G47890

ath:AT2G15080

ath:AT3G05660

ath:AT3G11010

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cell membrane0.852

Rank 1 · TkA04G081450 · TK1151

Endoplasmic reticulum0.089

Rank 2 · TkA04G081450 · TK1151

Cytoplasm0.062

Rank 3 · TkA04G081450 · TK1151

Nucleus0.043

Rank 4 · TkA04G081450 · TK1151

Lysosome / Vacuole0.026

Rank 5 · TkA04G081450 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF08263LRRNT_234-74 aa

PF13516LRR_682-90 aa

PF25019LRR_R13L1-DRL2182-109 aa

PF00560LRR_183-100 aa

PF12799LRR_483-120 aa

PF23598LRR_1483-163 aa

PF13855LRR_884-137 aa

PF23211LRR_LRWD192-160 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA04G081450	`PF08263`	LRRNT_2	34	74	3.9e-07	30.9
TkA04G081450	`PF13516`	LRR_6	82	90	1.3e-08	34.9
TkA04G081450	`PF25019`	LRR_R13L1-DRL21	82	109	0.001	19.7
TkA04G081450	`PF00560`	LRR_1	83	100	5e-36	115.6
TkA04G081450	`PF12799`	LRR_4	83	120	1.9e-25	89.0
TkA04G081450	`PF23598`	LRR_14	83	163	4.6e-21	75.7
TkA04G081450	`PF13855`	LRR_8	84	137	3.1e-27	94.8
TkA04G081450	`PF23211`	LRR_LRWD1	92	160	0.011	16.2
TkA04G081450	`PF25013`	LRR_Zer-1	97	161	7.9e-09	36.5
TkA04G081450	`PF29252`	LRR_NLRC4	99	136	2.1	8.2
TkA04G081450	`PF24758`	LRR_At5g56370	101	161	8.1e-06	26.4
TkA04G081450	`PF00560`	LRR_1	102	123	5e-36	115.6
TkA04G081450	`PF25019`	LRR_R13L1-DRL21	114	157	0.001	19.7
TkA04G081450	`PF13516`	LRR_6	125	139	1.3e-08	34.9
TkA04G081450	`PF00560`	LRR_1	126	145	5e-36	115.6
TkA04G081450	`PF12799`	LRR_4	126	162	1.9e-25	89.0

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`F4HTV4`	Arabidopsis thaliana	sp\|F4HTV4\|RLP14_ARATH Receptor-like protein 14	37.800%	Swiss-Prot	Low
`Q9C699`	Arabidopsis thaliana	sp\|Q9C699\|RLP7_ARATH Receptor-like protein 7	28.000%	Swiss-Prot	Low
`Q9S9U3`	Arabidopsis thaliana	sp\|Q9S9U3\|RLP53_ARATH Receptor-like protein 53	31.400%	Swiss-Prot	Low
`Q9SRL7`	Arabidopsis thaliana	sp\|Q9SRL7\|RLP35_ARATH Receptor-like protein 35	35.600%	Swiss-Prot	Low
`Q9ZUK7`	Arabidopsis thaliana	sp\|Q9ZUK7\|RLP18_ARATH Receptor-like protein 18	35.000%	Swiss-Prot	Low

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