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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA04G074520
Reference: TK1151 Chr: Chr04 Coordinates: 19631474-19633632 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

1883 bp · TkA04G074520|TK1151|cDNA

GTTGATGAAATAAAATACGCGTTTTTAATTCGATTTTTCTGTATTTAAACAAGAAAAAAACCCTCCAAATTCCACCATTGATTTGAGCCAAATGAGAATTCAATCTTCAGACTGGCTTCTGTTCCTATACTTTTTCGCAAGCTTTTTTAGGTTACATCCAACACTAGTTTCAGGTCAATGTCTCGATAACCAGAAATCCTTGCTGTTATCGTTGAAAAACGAGCTCAAATTCGACTCTTCACTCTCAACGAAGCTCGTCG...

CDS

Download CDS FASTA

861 bp · TkA04G074520|TK1151|CDS

ATGCTTTCTGAAAATAACTTCAATGGCGTTGTAGACTTAGAGACGTTTGGAAAGTTTAAGGAGCTATATGCACTTGAGCTTTCCTACAATCAGCTTACGGTAAGAGTAAATGCAACCAAATCATCGATTTCGTCACTCTCTGATCAGCTCAATACATTGAAGTTAGCTTCGTGCAAGATGCAAGAGCTTCCAATTTTGAAGAACCACTCAAGGCTGATGATGCTAGATCTTTCCGTTAATGACCTAACTGGTGAAATACC...

Protein

Download Protein FASTA

286 aa · TkA04G074520|TK1151|PROTEIN

MLSENNFNGVVDLETFGKFKELYALELSYNQLTVRVNATKSSISSLSDQLNTLKLASCKMQELPILKNHSRLMMLDLSVNDLTGEIPNWIWEVGNGYLRFLNLSNNRFSNLQKPYTFPFLLDVLDLHSNDLKGEIPVSPRRVYHLDYSSNNFGSSIPFDFGNVLRSTLFFSIAKSEVTGVIPQSIRNATSLRTLDLSHNALTGPIPAIGNLKDLQSLDLSVNKLNGSIPEEIASLGSLSFLNVSYNQLSGKIPQGSKFQM...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

Download Gene (CDS) Download Protein

ID Mapping

Input IDTkA04G074520
TK1151 IDTkA04G074520
OH-1004 IDLXL04_036111
Relationship / confidenceRbh Below Probable Coverage Or Synteny Threshold / Review
Protein identity (%)94.900
Protein coverage (%)TK1151 96.853 / OH-1004 51.391
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA04G074520
LocationChr04:19631474-19633632 (-)
DescriptionSimilar to IRK: Probable LRR receptor-like serine/threonine-protein kinase IRK
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At1g45616 Receptor-like protein 6. No verified direct reference in this release
At4g13810 Receptor-like protein 47. No verified direct reference in this release
At4g13900 Receptor-like protein 49. No verified direct reference in this release
At4g13920 Receptor-like protein 50. No verified direct reference in this release
At2g25470 Receptor like protein 21. No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_036111 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0007165 signal transduction Biological Process
GO:0048364 root development Biological Process
GO:0048767 root hair elongation Biological Process
GO:0051302 regulation of cell division Biological Process
GO:0090511 periclinal cell division Biological Process
GO:0005576 extracellular region Cellular Component
GO:0005886 plasma membrane Cellular Component
GO:0004674 protein serine/threonine kinase activity Molecular Function
GO:0005524 ATP binding Molecular Function
GO:0106310 protein serine kinase activity Molecular Function
KEGG gene cross-reference
ath:AT3G56370
ath:AT4G13810
ath:AT4G13880
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cell membrane0.720
Rank 1 · TkA04G074520 · TK1151
Endoplasmic reticulum0.122
Rank 2 · TkA04G074520 · TK1151
Cytoplasm0.082
Rank 3 · TkA04G074520 · TK1151
Nucleus0.062
Rank 4 · TkA04G074520 · TK1151
Extracellular0.059
Rank 5 · TkA04G074520 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00560LRR_12-12 aa
PF13855LRR_82-34 aa
PF29460LRR_NXF25-82 aa
PF12799LRR_47-32 aa
PF23598LRR_1412-36 aa
PF23211LRR_LRWD112-34 aa
PF00560LRR_122-33 aa
PF13516LRR_624-33 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA04G074520PF00560LRR_12122.6e-2274.8
TkA04G074520PF13855LRR_82343.6e-1659.4
TkA04G074520PF29460LRR_NXF25820.411.2
TkA04G074520PF12799LRR_47325.6e-1349.4
TkA04G074520PF23598LRR_1412361.9e-1040.7
TkA04G074520PF23211LRR_LRWD112344.2e-0627.3
TkA04G074520PF00560LRR_122332.6e-2274.8
TkA04G074520PF13516LRR_624335.5e-0523.6
TkA04G074520PF23952LRR_EndoS42800.08913.7
TkA04G074520PF25019LRR_R13L1-DRL2144770.09713.3
TkA04G074520PF12799LRR_449825.6e-1349.4
TkA04G074520PF23211LRR_LRWD1491294.2e-0627.3
TkA04G074520PF00560LRR_150622.6e-2274.8
TkA04G074520PF13855LRR_8501083.6e-1659.4
TkA04G074520PF13516LRR_650605.5e-0523.6
TkA04G074520PF23598LRR_14521381.9e-1040.7

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
Q9C637Arabidopsis thalianasp|Q9C637|RLP6_ARATH Receptor-like protein 630.500%Swiss-ProtMedium
Q9SVN2Arabidopsis thalianasp|Q9SVN2|RLP47_ARATH Receptor-like protein 4734.000%Swiss-ProtMedium
Q9SVM3Arabidopsis thalianasp|Q9SVM3|RLP49_ARATH Receptor-like protein 4932.000%Swiss-ProtMedium
Q93YT3Arabidopsis thalianasp|Q93YT3|RLP50_ARATH Receptor-like protein 5026.100%Swiss-ProtLow
Q9SKK2Arabidopsis thalianasp|Q9SKK2|RLP21_ARATH Receptor like protein 2128.300%Swiss-ProtLow

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