TkA04G071300 | RubberDandelionOmics

Gene overview

TkA04G071300

Reference: TK1151 Chr: Chr04 Coordinates: 18890136-18892377 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1753 bp · TkA04G071300|TK1151|cDNA

GCAAACTCCGGTAATTACCGTTAAAACCCTCCCCACCTGTATAAATTCATATCAACACTCATCCGCCCACCACTTACTTTTTCACATTCAACTTCACTCTCAACAAACCCTAATTCAATCAGTTCCACTCTTGATTTTCGTTCTTTTTTAAACAAAAATGCGTGAGATTCTTCACATCCAAGGAGGCCAATGCGGCAACCAGATCGGTGCCAAGTTCTGGGAGGTGGTTTGTGCTGAACACGGCATTGATTCTACTGGCC...

CDS

Download CDS FASTA

1146 bp · TkA04G071300|TK1151|CDS

ATGCGTGAGATTCTTCACATCCAAGGAGGCCAATGCGGCAACCAGATCGGTGCCAAGTTCTGGGAGGTGGTTTGTGCTGAACACGGCATTGATTCTACTGGCCGTTACCAAGGCGATACAGATCTGCAACTAGAGAGGATCAATGTTTATTACAATGAAGCTAGTTGTGGCAGATTCGTTCCTAGGGCCGTACTTATGGATCTCGAGCCCGGTACCATGGATAGTCTCAGATCTGGTCCTTATGGACAAATCTTCCGACC...

Protein

Download Protein FASTA

381 aa · TkA04G071300|TK1151|PROTEIN

MREILHIQGGQCGNQIGAKFWEVVCAEHGIDSTGRYQGDTDLQLERINVYYNEASCGRFVPRAVLMDLEPGTMDSLRSGPYGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDRTMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLTTPSFGDLNHLISATMSGVTCCLRFPGQLNSDLRKLAVNLVPF...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA04G071300`
TK1151 ID	TkA04G071300
OH-1004 ID	LXL04_036150
Relationship / confidence	Non Reciprocal Best Hit / Complex relationship
Protein identity (%)	100.000
Protein coverage (%)	TK1151 96.063 / OH-1004 81.696 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

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Basic Information and Functional Annotation

Gene ID TkA04G071300

Location Chr04:18890136-18892377 (-)

Description Similar to TUBB1: Tubulin beta-1 chain

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At5g23860`	Tubulin is the major constituent of microtubules, a cylinder consisting of laterally associated linear protofilaments composed of alpha- and beta-tubulin heterodimers.	No verified direct reference in this release

Rice

Reference gene ID	Possible function	Papers / DOI
`Os03g0105600`	Tubulin is the major constituent of microtubules, a cylinder consisting of laterally associated linear protofilaments composed of alpha- and beta-tubulin heterodimers.	No verified direct reference in this release

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_036150 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0000226 microtubule cytoskeleton organization Biological Process

GO:0000278 mitotic cell cycle Biological Process

GO:0007017 microtubule-based process Biological Process

GO:0090378 seed trichome elongation Biological Process

GO:0005737 cytoplasm Cellular Component

GO:0005874 microtubule Cellular Component

GO:0003924 GTPase activity Molecular Function

GO:0005200 structural constituent of cytoskeleton Molecular Function

GO:0005525 GTP binding Molecular Function

GO:0046872 metal ion binding Molecular Function

KEGG gene cross-reference

ghi:107926975

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.699

Rank 1 · TkA04G071300 · TK1151

Mitochondrion0.216

Rank 2 · TkA04G071300 · TK1151

Nucleus0.100

Rank 3 · TkA04G071300 · TK1151

Cell membrane0.034

Rank 4 · TkA04G071300 · TK1151

Peroxisome0.029

Rank 5 · TkA04G071300 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF10644Misat_Tub_SegII2-77 aa

PF00091Tubulin3-211 aa

PF14881Tubulin_3120-192 aa

PF13809Tubulin_2135-176 aa

PF03953Tubulin_C261-364 aa

PF13809Tubulin_2306-350 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA04G071300	`PF10644`	Misat_Tub_SegII	2	77	0.0021	19.1
TkA04G071300	`PF00091`	Tubulin	3	211	1.2e-64	218.8
TkA04G071300	`PF14881`	Tubulin_3	120	192	0.0015	18.9
TkA04G071300	`PF13809`	Tubulin_2	135	176	0.0035	17.3
TkA04G071300	`PF03953`	Tubulin_C	261	364	3.5e-34	118.4
TkA04G071300	`PF13809`	Tubulin_2	306	350	0.0035	17.3

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`P29516`	Arabidopsis thaliana	sp\|P29516\|TBB8_ARATH Tubulin beta-8 chain	98.400%	Swiss-Prot	High
`Q8H7U1`	Oryza sativa subsp. japonica	sp\|Q8H7U1\|TBB2_ORYSJ Tubulin beta-2 chain	97.300%	Swiss-Prot	High

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