TkA04G068630 | RubberDandelionOmics

Gene overview

TkA04G068630

Reference: TK1151 Chr: Chr04 Coordinates: 18188209-18188592 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

384 bp · TkA04G068630|TK1151|cDNA

ATGGCAACAGAGATGGCATTGCTCAAACCCATCTCCAAAATCGGGTACTGCGGCAGCTCCCCCATCACCTCCACAAGAACAATCCTGCCGCAGAGAATCTCCACCGTTCGTATGTCAGCAGCTACCGCCACCACCGCCACCCCGACCAAAGGAAGCGGCGGTGGAAAGAACAAGAAGGGAATTAAGGAAACCCTGCTGGCGCCACGGTTCTACACCACTGATTTCGATGAGATGGAGCAGCTGTTCAACACCGAGATGAA...

CDS

Download CDS FASTA

384 bp · TkA04G068630|TK1151|CDS

ATGGCAACAGAGATGGCATTGCTCAAACCCATCTCCAAAATCGGGTACTGCGGCAGCTCCCCCATCACCTCCACAAGAACAATCCTGCCGCAGAGAATCTCCACCGTTCGTATGTCAGCAGCTACCGCCACCACCGCCACCCCGACCAAAGGAAGCGGCGGTGGAAAGAACAAGAAGGGAATTAAGGAAACCCTGCTGGCGCCACGGTTCTACACCACTGATTTCGATGAGATGGAGCAGCTGTTCAACACCGAGATGAA...

Protein

Download Protein FASTA

127 aa · TkA04G068630|TK1151|PROTEIN

MATEMALLKPISKIGYCGSSPITSTRTILPQRISTVRMSAATATTATPTKGSGGGKNKKGIKETLLAPRFYTTDFDEMEQLFNTEMNKNLNEAEFEALLQEFKTDYNQTHFVRNKELKKLLMGFRVL

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA04G068630`
TK1151 ID	TkA04G068630
OH-1004 ID	LXL04_036194
Relationship / confidence	Non Reciprocal Best Hit / Complex relationship
Protein identity (%)	94.400
Protein coverage (%)	TK1151 98.425 / OH-1004 30.562 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID TkA04G068630

Location Chr04:18188209-18188592 (+)

Description Similar to CRD1: Magnesium-protoporphyrin IX monomethyl ester [oxidative] cyclase, chloroplastic

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At3g56940`	Catalytic component of the MgProto monomethylester (MgProtoME) cyclase complex that catalyzes the formation of the isocyclic ring in chlorophyll biosynthesis.	Arabidopsis CHL27, located in both envelope and thylakoid membranes, is required for the synthesis of protochlorophyllide.2003 · DOI: 10.1073/pnas.2136793100 Role of Arabidopsis CHL27 protein for photosynthesis, chloroplast development and gene expression profiling.2008 · DOI: 10.1093/pcp/pcn111 Potential roles of YCF54 and ferredoxin-NADPH reductase for magnesium protoporphyrin monomethylester cyclase.2018 · DOI: 10.1111/tpj.13869

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_036194 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0009658 chloroplast organization Biological Process

GO:0015979 photosynthesis Biological Process

GO:0015995 chlorophyll biosynthetic process Biological Process

GO:1901401 regulation of tetrapyrrole metabolic process Biological Process

GO:0009507 chloroplast Cellular Component

GO:0009534 chloroplast thylakoid Cellular Component

GO:0009535 chloroplast thylakoid membrane Cellular Component

GO:0009706 chloroplast inner membrane Cellular Component

GO:0009941 chloroplast envelope Cellular Component

GO:0031969 chloroplast membrane Cellular Component

GO:0003677 DNA binding Molecular Function

GO:0003729 mRNA binding Molecular Function

KEGG gene cross-reference

ath:AT3G56940

cre:CHLRE_12g510050v5

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Plastid0.938

Rank 1 · TkA04G068630 · TK1151

Mitochondrion0.054

Rank 2 · TkA04G068630 · TK1151

Nucleus0.026

Rank 3 · TkA04G068630 · TK1151

Cytoplasm0.013

Rank 4 · TkA04G068630 · TK1151

Cell membrane0.010

Rank 5 · TkA04G068630 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF27426AF0631_C89-115 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA04G068630	`PF27426`	AF0631_C	89	115	0.065	14.1

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q9M591`	Arabidopsis thaliana	sp\|Q9M591\|CRD1_ARATH Magnesium-protoporphyrin IX monomethyl ester [oxidative] cyclase, chloroplastic	63.400%	Swiss-Prot	High

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