Gene Card
Gene overview
cDNA / CDS / Protein Sequences
1320 bp · TkA04G067450|TK1151|cDNA
TCTCATACAAAAGATACCCACGCTTTCTCACACTTCATGTTCGCCTCCTCTCCTCCTCCTCCATAGCAGCAGCTTCTCTGCCATTGCGGTGCCAGATTGAGGTCTCTAAATACTACAAGACAACCTTCTAAGCTTTCTATTAGTAGCATGGCCTTCAGGAGGCTGTTATGCTCTGTGGGTTCAACTTATAAACTCCAGTCCAGTAATCATCAGAATGCTGTGAATCGATCTTTCCACATTCTTTCTACCGCCTTGCGTGA...
930 bp · TkA04G067450|TK1151|CDS
ATGGCCTTCAGGAGGCTGTTATGCTCTGTGGGTTCAACTTATAAACTCCAGTCCAGTAATCATCAGAATGCTGTGAATCGATCTTTCCACATTCTTTCTACCGCCTTGCGTGAACATGAAACTCTTGATAATCAGGAACATTCCTTCTTTAAAAAGGCAGGGTTTCCTTTGATAGGAAGTCGAGGTCTGTCTACTTCCATGCCAACCGAATCTTCAGATTCCTTCCCATCTGACCTACTTTCAAGAAAACAAATCCTAAC...
Protein
Download Protein FASTA309 aa · TkA04G067450|TK1151|PROTEIN
MAFRRLLCSVGSTYKLQSSNHQNAVNRSFHILSTALREHETLDNQEHSFFKKAGFPLIGSRGLSTSMPTESSDSFPSDLLSRKQILTPDRELGQLQDLVIPVTNFHNEDKGMMVLAGDVFDVPIRKDIIHRVVRWQLAKRQQGTHSTKTISEVSGTGKKPWPQKGTGRARHGSLRGPQFRTGAVMHGPKPRSHAFKLNKKVRRLGLKIALSARAAEGKLLVFDDFELPTHKTKNIVSYVNQLDETKKVLMVDGGPIDDNL...
Flanking Sequence Download
Sequence orientation and download details
Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.
ID Mapping
| Input ID | TkA04G067450 |
|---|---|
| TK1151 ID | TkA04G067450 |
| OH-1004 ID | LXL04_036175 |
| Relationship / confidence | Rbh High Identity Coverage Synteny / Strict |
| Protein identity (%) | 97.800 |
| Protein coverage (%) | TK1151 100.000 / OH-1004 100.000Coverage and evidenceCoverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation. |
| Source version | TK1151 / GWHBCHF00000000 |
SNP / Indel variants and carrier samplesCRA009020 · TK1151
Expand to load variant records for this gene.
Basic Information and Functional Annotation
| Gene ID | TkA04G067450 |
|---|---|
| Location | Chr04:17881340-17883801 (-) |
| Description | Similar to rplD: 50S ribosomal protein L4 (Rhodospirillum centenum (strain ATCC 51521 / SW) |
| Arabidopsis / Rice Reference Genes and Papers |
Download references for this gene ArabidopsisNo hit for this species in the current source table. RiceNo hit for this species in the current source table. |
| Functional annotation source | View annotation sourcesFunctional annotation source: OH1004 · |
| GO annotations (OH1004 source) | GO:0006412 translation Biological Process GO:0005840 ribosome Cellular Component GO:1990904 ribonucleoprotein complex Cellular Component GO:0003735 structural constituent of ribosome Molecular Function GO:0019843 rRNA binding Molecular Function |
| KEGG gene cross-reference | mag:amb3129 rbe:RBE_1061 rbo:A1I_02040 rce:RC1_0712 rru:Rru_A2687 These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene. |
Gene expression
View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.
Data sources and gene correspondence
Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.
Subcellular Localization Top 5
Computational predictions or homology annotations below do not replace localization experiments.
LocPro · Direct prediction · Computational prediction, not experimental localization
Predicted Functional Domains
Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.
PF00573Ribosomal_L4115-302 aa| Gene ID | Domain ID | Domain Name | Start aa | End aa | E-value | Score |
|---|---|---|---|---|---|---|
| TkA04G067450 | PF00573 | Ribosomal_L4 | 115 | 302 | 5.9e-70 | 235.5 |
Arabidopsis / Rice Protein Homology
Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.
No result was found for this query.