RubberDandelionOmics Rubber Dandelion Multi-omics Website
More
Transcriptome Expression Annotation Rubber Pathway TF Prediction Targets Protein Network Resequencing Tools Downloads
ZH EN

How to use this page

Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA04G063620
Reference: TK1151 Chr: Chr04 Coordinates: 16956422-16962433 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

3394 bp · TkA04G063620|TK1151|cDNA

CTCAAGACCGCCACCCCACAAACTGAACCCCAACGGCCTAACCCATTCGACACCCCTGTATATGATTTTGTATCCGGCTCAAGCTGTTCGCGATCTTTCCTCTCTCTCCCTCTACAGTCGATAAATTGATTTATCTCTCTAGATTCATCGCCTCCGCATCTTTGCTGGACCCGTTCTGCTGTTGTCCTCCACTATCCACGATCAGATCTCCATGACCGTTTTCCCCCTTTCTTCCTCCCCTTGCCACCACCAATTTTGAA...

CDS

Download CDS FASTA

2853 bp · TkA04G063620|TK1151|CDS

ATGGATAATTTTTACGTAATGGAAGTCATCCGCCGAGGAAAATACTTCACTGTATACAAAGGGATGAAGAAGGAAAACTTTAACATTTACGCAATCAAAAGCGTTGACAAATCGCATAAGAGCACGGTTCTTCACGAAGTTAGAATTCTTCGGTCTTTGGATCATTGTAATGTAGTCAAATTTTATGCTTGGTATGAAAATTTTGCTGAATTGTGGTTGGTTTTAGAGTACTGTGGTGGAGGTGATCTTCGGGCATTACT...

Protein

Download Protein FASTA

950 aa · TkA04G063620|TK1151|PROTEIN

MDNFYVMEVIRRGKYFTVYKGMKKENFNIYAIKSVDKSHKSTVLHEVRILRSLDHCNVVKFYAWYENFAELWLVLEYCGGGDLRALLRMAGGLPEDSVRVIACDVVSGLSCLHSKGIIHGDLKPSSILFDGNGCIKLCDFGLSKELSDISKTPLSSEVGEGNKRRSPCYMAPELFDDGGVHSYASDLWALGCVMYECYAGRPPFLGKEPTEIVESILTDPTPSLPGNPSRPFAELVSCLLIKDPTARIQFSEVCTHAFWK...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

Download Gene (CDS) Download Protein

ID Mapping

Input IDTkA04G063620
TK1151 IDTkA04G063620
OH-1004 IDLXL04_005959
Relationship / confidenceMulti Source To Oh1004 / Complex relationship
Protein identity (%)53.300
Protein coverage (%)TK1151 98.947 / OH-1004 98.958
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA04G063620
LocationChr04:16956422-16962433 (+)
DescriptionSimilar to RUK: Serine/threonine-protein kinase RUNKEL
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At5g18700 Essential protein that regulates phragmoplast microtubule organization during cell plate expansion in cytokinesis during cell division, both somatic and syncytial. No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_005959 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0000226 microtubule cytoskeleton organization Biological Process
GO:0000911 cytokinesis by cell plate formation Biological Process
GO:0000914 phragmoplast assembly Biological Process
GO:0003351 epithelial cilium movement involved in extracellular fluid movement Biological Process
GO:0007224 smoothened signaling pathway Biological Process
GO:0007349 cellularization Biological Process
GO:0009555 pollen development Biological Process
GO:0009556 microsporogenesis Biological Process
GO:0009966 regulation of signal transduction Biological Process
GO:0010245 radial microtubular system formation Biological Process
GO:0010342 endosperm cellularization Biological Process
GO:0010467 gene expression Biological Process
KEGG gene cross-reference
ath:AT5G18700
hsa:54986
mmu:209012
pon:100173957
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.476
Rank 1 · TkA04G063620 · TK1151
Cytoplasm0.466
Rank 2 · TkA04G063620 · TK1151
Cell membrane0.084
Rank 3 · TkA04G063620 · TK1151
Golgi apparatus0.066
Rank 4 · TkA04G063620 · TK1151
Endoplasmic reticulum0.062
Rank 5 · TkA04G063620 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00069Pkinase7-258 aa
PF07714PK_Tyr_Ser-Thr7-254 aa
PF01636APH41-109 aa
PF03109ABC172-152 aa
PF02985HEAT94-108 aa
PF07387Seadorna_VP7106-140 aa
PF14531Kinase-like107-214 aa
PF01636APH115-141 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA04G063620PF00069Pkinase72583.3e-56191.3
TkA04G063620PF07714PK_Tyr_Ser-Thr72542.1e-37129.5
TkA04G063620PF01636APH411090.1912.2
TkA04G063620PF03109ABC1721520.0003720.5
TkA04G063620PF02985HEAT941080.005817.5
TkA04G063620PF07387Seadorna_VP71061400.02414.4
TkA04G063620PF14531Kinase-like1072140.0001821.6
TkA04G063620PF01636APH1151410.1912.2
TkA04G063620PF24768ARM_ARMC54105255.2e-0523.5
TkA04G063620PF11865mTOR_dom4134790.3611.5
TkA04G063620PF23606HEAT_ULK44174726e-2898.4
TkA04G063620PF23295Arm_44175270.1312.3
TkA04G063620PF14531Kinase-like4234430.0001821.6
TkA04G063620PF01862PvlArgDC4384720.06814.0
TkA04G063620PF00514Arm4544800.06913.9
TkA04G063620PF02985HEAT4554850.005817.5

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
F4JY37Arabidopsis thalianasp|F4JY37|RUK_ARATH Serine/threonine-protein kinase RUNKEL40.700%Swiss-ProtMedium

JBrowse

View in Genome Browser