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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA04G053650
Reference: TK1151 Chr: Chr04 Coordinates: 14330521-14333710 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

681 bp · TkA04G053650|TK1151|cDNA

ATGGCTGGTGTTTGGGTGTTCAAGAATGGTGTGCTTCGGTTGGTGGAGAACACCGGAAGTGATTCCTTTCAGGGTTCTAGTCGACGTAAGGTGTTGGTTCATGTAGACACAAACGAAATGGTGACTTCGTATGTGGTGCTGGAAAGAATCTTATTGGCATGCGGATGGGAGAGGTACTACGATGATCCTGACCTATTTCAGTTTCATAAAAGGTCAAATGTGCACCTAATTTCTCTCCCTAAAGATTTCAACAAGTTCAA...

CDS

Download CDS FASTA

681 bp · TkA04G053650|TK1151|CDS

ATGGCTGGTGTTTGGGTGTTCAAGAATGGTGTGCTTCGGTTGGTGGAGAACACCGGAAGTGATTCCTTTCAGGGTTCTAGTCGACGTAAGGTGTTGGTTCATGTAGACACAAACGAAATGGTGACTTCGTATGTGGTGCTGGAAAGAATCTTATTGGCATGCGGATGGGAGAGGTACTACGATGATCCTGACCTATTTCAGTTTCATAAAAGGTCAAATGTGCACCTAATTTCTCTCCCTAAAGATTTCAACAAGTTCAA...

Protein

Download Protein FASTA

226 aa · TkA04G053650|TK1151|PROTEIN

MAGVWVFKNGVLRLVENTGSDSFQGSSRRKVLVHVDTNEMVTSYVVLERILLACGWERYYDDPDLFQFHKRSNVHLISLPKDFNKFKSMHMYERVVKNRNVFEVRDIITYQELRIYYMSGVWVFKNGVLRLVENNGSDSFQGSSRRKVLVHVSTNEVVTSSEVLERILFSCGWEKYYNDPDLFQFHKRSNVHLISLPKAFNKFKSMHMYDIVVKNRNLFEVRDIIS

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkA04G053650
TK1151 IDTkA04G053650
OH-1004 IDLXL04_036342
Relationship / confidenceSequence Supported Annotation Or Model Conflict / Review
Protein identity (%)100.000
Protein coverage (%)TK1151 48.230 / OH-1004 100.000
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA04G053650
LocationChr04:14330521-14333710 (+)
DescriptionSimilar to Os02g0460200: Flowering-promoting factor 1-like protein 3
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At5g24860 Modulates the competence to flowering of apical meristems.
FPF1 modulates the competence to flowering in Arabidopsis.1999 · DOI: 10.1046/j.1365-313x.1999.00461.x
FPF1 promotes flowering in Arabidopsis.1997 · DOI: 10.1105/tpc.9.8.1327
At5g10625 Modulates the competence to flowering of apical meristems. No verified direct reference in this release

Rice

Reference gene IDPossible functionPapers / DOI
Os02g0460200 Flowering-promoting factor 1-like protein 3. No verified direct reference in this release
Os01g0257300 GTP-binding protein that functions in the development of root systems, which are mediated by auxin.
Overexpression of OsRAA1 causes pleiotropic phenotypes in transgenic rice plants, including altered leaf, flower, and root development and root response to gravity.2004 · DOI: 10.1104/pp.104.041996
Biochemical character of the purified OsRAA1, a novel rice protein with GTP-binding activity, and its expression pattern in Oryza sativa.2005 · DOI: 10.1016/j.jplph.2004.12.001
Rice ROOT ARCHITECTURE ASSOCIATED1 binds the proteasome subunit RPT4 and is degraded in a D-box and proteasome-dependent manner.2008 · DOI: 10.1104/pp.108.125294
Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_036342 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0009733 response to auxin Biological Process
GO:0009909 regulation of flower development Biological Process
GO:0009911 positive regulation of flower development Biological Process
GO:0010228 vegetative to reproductive phase transition of meristem Biological Process
GO:0045841 negative regulation of mitotic metaphase/anaphase transition Biological Process
GO:2000280 regulation of root development Biological Process
GO:0005634 nucleus Cellular Component
GO:0005737 cytoplasm Cellular Component
GO:0005739 mitochondrion Cellular Component
GO:0005525 GTP binding Molecular Function
KEGG gene cross-reference
ath:AT5G10625
ath:AT5G24860
dosa:Os01g0257300
dosa:Os02g0460200
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.604
Rank 1 · TkA04G053650 · TK1151
Nucleus0.289
Rank 2 · TkA04G053650 · TK1151
Extracellular0.163
Rank 3 · TkA04G053650 · TK1151
Cell membrane0.063
Rank 4 · TkA04G053650 · TK1151
Mitochondrion0.051
Rank 5 · TkA04G053650 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF07593UnbV_ASPIC2-41 aa
PF23228zf_PCFS44-36 aa
PF14472DUF44299-41 aa
PF26213TYRAAT1_C11-24 aa
PF30323YPL068C_M57-88 aa
PF08508DUF174658-86 aa
PF12171zf-C2H2_jaz58-75 aa
PF26213TYRAAT1_C64-88 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA04G053650PF07593UnbV_ASPIC2410.3411.6
TkA04G053650PF23228zf_PCFS44360.05613.8
TkA04G053650PF14472DUF44299410.03615.4
TkA04G053650PF26213TYRAAT1_C11240.0009619.6
TkA04G053650PF30323YPL068C_M57880.1312.7
TkA04G053650PF08508DUF174658860.003617.8
TkA04G053650PF12171zf-C2H2_jaz58750.006117.4
TkA04G053650PF26213TYRAAT1_C64880.0009619.6
TkA04G053650PF25519ILCR1_N64920.001119.6
TkA04G053650PF08508DUF17461051180.003617.8
TkA04G053650PF23228zf_PCFS41201520.05613.8
TkA04G053650PF07593UnbV_ASPIC1211600.3411.6
TkA04G053650PF14472DUF44291231480.03615.4
TkA04G053650PF26213TYRAAT1_C1281410.0009619.6
TkA04G053650PF30323YPL068C_M1692040.1312.7
TkA04G053650PF08508DUF17461752140.003617.8

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
O23624Arabidopsis thalianasp|O23624|FPF1_ARATH Flowering-promoting factor 161.100%Swiss-ProtLow
Q9LXB5Arabidopsis thalianasp|Q9LXB5|FLP2_ARATH Flowering-promoting factor 1-like protein 260.000%Swiss-ProtLow
Q0E1D7Oryza sativa subsp. japonicasp|Q0E1D7|FLP3_ORYSJ Flowering-promoting factor 1-like protein 360.700%Swiss-ProtLow
Q9LGE3Oryza sativa subsp. japonicasp|Q9LGE3|FLP1_ORYSJ Flowering-promoting factor 1-like protein 158.700%Swiss-ProtLow

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