RubberDandelionOmics Rubber Dandelion Multi-omics Website
More
Transcriptome Expression Annotation Rubber Pathway TF Prediction Targets Protein Network Resequencing Tools Downloads
ZH EN

How to use this page

Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA04G043850
Reference: TK1151 Chr: Chr04 Coordinates: 11800366-11800725 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

360 bp · TkA04G043850|TK1151|cDNA

ATGCTAAAAGGGTATTTAGCAAACACGATAACATACAATATTATGATACGCGGTTTTTGCAAATTGGGTAGAAATCAAGAAGCTATGAAGATCTTGGATGAGATGTTTGGAAATGGAATATTGCCAGATCATGTGAGTTATTCGACTATTATTCATGAATATTGTAAAAAAGGTGATGTACATGAAGCTATAAAGCTATGGGAGTTGATGATTGATAATGGTGTGAAACCGGATGATGTGGCATATAGCTTTATAATACA...

CDS

Download CDS FASTA

360 bp · TkA04G043850|TK1151|CDS

ATGCTAAAAGGGTATTTAGCAAACACGATAACATACAATATTATGATACGCGGTTTTTGCAAATTGGGTAGAAATCAAGAAGCTATGAAGATCTTGGATGAGATGTTTGGAAATGGAATATTGCCAGATCATGTGAGTTATTCGACTATTATTCATGAATATTGTAAAAAAGGTGATGTACATGAAGCTATAAAGCTATGGGAGTTGATGATTGATAATGGTGTGAAACCGGATGATGTGGCATATAGCTTTATAATACA...

Protein

Download Protein FASTA

119 aa · TkA04G043850|TK1151|PROTEIN

MLKGYLANTITYNIMIRGFCKLGRNQEAMKILDEMFGNGILPDHVSYSTIIHEYCKKGDVHEAIKLWELMIDNGVKPDDVAYSFIIHGCCVAGELTKAVDFRDDMAKRGLKLNQNLKIL

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

Download Gene (CDS) Download Protein

ID Mapping

Input IDTkA04G043850
TK1151 IDTkA04G043850
OH-1004 IDLXL04_036456
Relationship / confidenceNon Reciprocal Best Hit / Complex relationship
Protein identity (%)97.400
Protein coverage (%)TK1151 32.773 / OH-1004 1.854
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA04G043850
LocationChr04:11800366-11800725 (-)
DescriptionSimilar to At5g59900: Putative pentatricopeptide repeat-containing protein At5g59900
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At5g59900 Putative pentatricopeptide repeat-containing protein At5g59900. No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_036456 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0005739 mitochondrion Cellular Component
GO:0009507 chloroplast Cellular Component
GO:0003729 mRNA binding Molecular Function
KEGG gene cross-reference
ath:AT5G39710
ath:AT5G59900
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Mitochondrion0.751
Rank 1 · TkA04G043850 · TK1151
Plastid0.073
Rank 2 · TkA04G043850 · TK1151
Cytoplasm0.066
Rank 3 · TkA04G043850 · TK1151
Nucleus0.055
Rank 4 · TkA04G043850 · TK1151
Peroxisome0.015
Rank 5 · TkA04G043850 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF24028DUF73392-35 aa
PF12854PPR_13-35 aa
PF17177PPR_long4-97 aa
PF23276TPR_245-51 aa
PF13812PPR_37-54 aa
PF13041PPR_28-55 aa
PF29070MSC6_N8-98 aa
PF01535PPR10-40 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA04G043850PF24028DUF73392350.01716.0
TkA04G043850PF12854PPR_13351.7e-38130.7
TkA04G043850PF17177PPR_long4972.5e-0731.0
TkA04G043850PF23276TPR_245513e-0937.6
TkA04G043850PF13812PPR_37542e-1660.5
TkA04G043850PF13041PPR_28555.6e-42142.3
TkA04G043850PF29070MSC6_N8984.1e-0523.6
TkA04G043850PF01535PPR10401.4e-2897.8
TkA04G043850PF10037MRP-S2711719.9e-0522.2
TkA04G043850PF06239ECSIT_N11660.05413.5
TkA04G043850PF24760TPR_IF140_C12350.0002322.3
TkA04G043850PF12921ATP1316350.04114.5
TkA04G043850PF13176TPR_719340.3211.9
TkA04G043850PF24406nSTAND_NTPase424440.2612.2
TkA04G043850PF13812PPR_330892e-1660.5
TkA04G043850PF12921ATP1332680.04114.5

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
Q9FJE6Arabidopsis thalianasp|Q9FJE6|PP437_ARATH Putative pentatricopeptide repeat-containing protein At5g5990054.800%Swiss-ProtLow

JBrowse

View in Genome Browser