Gene Card
Gene overview
cDNA / CDS / Protein Sequences
2992 bp · TkA04G043840|TK1151|cDNA
GGGAATTAGAGGCGCAAGGAAAAATCAAGAGAGAAGGACGCGTGCGTAGAAGACGAGGAGACGAGGTTGAGGTTGCAACAGTCTTAATCGTAGGCGATTGAGGATCTGCAATTTATTCGCCCAAATCCAATTAATCGCTGATTTATCAACGGCAACCATGAGTGATGAAGGAGAAAAGACCTGCCCACTTTGTGCTGAAGAGATGGATTTGACAGATCAGCAACTGAGGCCTTGCAAATGTGGATATGATATTTGTGTTT...
2418 bp · TkA04G043840|TK1151|CDS
ATGAGTGATGAAGGAGAAAAGACCTGCCCACTTTGTGCTGAAGAGATGGATTTGACAGATCAGCAACTGAGGCCTTGCAAATGTGGATATGATATTTGTGTTTGGTGTTGGCACCACATTATGGATATGGCTGAAAAGGATGATACAGAAGGAAGGTGTCCAGCATGTCGTACACCTTACAACAAGGAAAAAATAGTCGGGACCGCATCAAAGTGTGAAAGATTGGTGGCTGAAATGAGTGTGGAGAAGAAACAGAAGTC...
Protein
Download Protein FASTA805 aa · TkA04G043840|TK1151|PROTEIN
MSDEGEKTCPLCAEEMDLTDQQLRPCKCGYDICVWCWHHIMDMAEKDDTEGRCPACRTPYNKEKIVGTASKCERLVAEMSVEKKQKSLKGKTRTSEGRKQLSSVRVIQRNLVYIVGLPLNLADEDILQRKEYFGQYGKVVKVSISRTAAGSIQHFANNTCSVYITYSKEDEAVRSIQAVHGFVLEGRPLRACFGTTKYCHAWLRNMPCTNPECLYLHEFGSQEDSFTKDEIISEYTRGRVQQVSGVTNDIQRRSGNILPP...
Flanking Sequence Download
Sequence orientation and download details
Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.
ID Mapping
| Input ID | TkA04G043840 |
|---|---|
| TK1151 ID | TkA04G043840 |
| OH-1004 ID | LXL04_036456 |
| Relationship / confidence | Rbh Below Probable Coverage Or Synteny Threshold / Review |
| Protein identity (%) | 90.800 |
| Protein coverage (%) | TK1151 93.540 / OH-1004 35.711Coverage and evidenceCoverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation. |
| Source version | TK1151 / GWHBCHF00000000 |
SNP / Indel variants and carrier samplesCRA009020 · TK1151
Expand to load variant records for this gene.
Basic Information and Functional Annotation
| Gene ID | TkA04G043840 |
|---|---|
| Location | Chr04:11793095-11797925 (-) |
| Description | Similar to At5g59900: Putative pentatricopeptide repeat-containing protein At5g59900 |
| Arabidopsis / Rice Reference Genes and Papers |
Download references for this gene ArabidopsisNo hit for this species in the current source table. RiceNo hit for this species in the current source table. |
| Functional annotation source | View annotation sourcesFunctional annotation source: OH1004 · |
| GO annotations (OH1004 source) | GO:0005739 mitochondrion Cellular Component GO:0009507 chloroplast Cellular Component GO:0003729 mRNA binding Molecular Function |
| KEGG gene cross-reference | ath:AT5G39710 ath:AT5G59900 These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene. |
Gene expression
View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.
Data sources and gene correspondence
Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.
Subcellular Localization Top 5
Computational predictions or homology annotations below do not replace localization experiments.
LocPro · Direct prediction · Computational prediction, not experimental localization
Predicted Functional Domains
Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.
PF01363FYVE2-60 aaPF14569zf-UDP5-64 aaPF13920zf-C3HC4_36-61 aaPF05290Baculo_IE-18-64 aaPF13639zf-RING_28-57 aaPF14570zf-RING_49-61 aaPF00076RRM_1112-190 aaPF14605Nup35_RRM_2125-172 aa| Gene ID | Domain ID | Domain Name | Start aa | End aa | E-value | Score |
|---|---|---|---|---|---|---|
| TkA04G043840 | PF01363 | FYVE | 2 | 60 | 0.8 | 10.6 |
| TkA04G043840 | PF14569 | zf-UDP | 5 | 64 | 0.028 | 15.2 |
| TkA04G043840 | PF13920 | zf-C3HC4_3 | 6 | 61 | 3.0 | 8.4 |
| TkA04G043840 | PF05290 | Baculo_IE-1 | 8 | 64 | 0.0036 | 18.0 |
| TkA04G043840 | PF13639 | zf-RING_2 | 8 | 57 | 0.16 | 12.9 |
| TkA04G043840 | PF14570 | zf-RING_4 | 9 | 61 | 2.1e-19 | 69.7 |
| TkA04G043840 | PF00076 | RRM_1 | 112 | 190 | 1.4e-05 | 25.5 |
| TkA04G043840 | PF14605 | Nup35_RRM_2 | 125 | 172 | 0.055 | 14.1 |
| TkA04G043840 | PF22683 | Nab2-like_zf-CCCH_ | 207 | 220 | 0.011 | 16.3 |
| TkA04G043840 | PF02101 | Ocular_alb | 293 | 357 | 7.1 | 6.1 |
Arabidopsis / Rice Protein Homology
Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.
No result was found for this query.