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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA04G043620
Reference: TK1151 Chr: Chr04 Coordinates: 11740308-11741678 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

546 bp · TkA04G043620|TK1151|cDNA

ATGGCCGCTCCACCAGCAAGAGCACGAGCAGATTATGATTACCTCATAAAGCTCCTCTTGATTGGCGACAGCGGTGTGGGAAAGAGTTGCCTTCTTTTGCGATTTTCTGATGGATCTTTCACTACAAGCTTCATCACTACCATCGGTATTGATTTTAAGATAAGAACAATTGAACTTGATGGCAAACGGATCAAACTCCAAATCTGGGACACAGCTGGTCAGGAACGATTCCGAACAATCACAACTGCTTACTATAGGGG...

CDS

Download CDS FASTA

546 bp · TkA04G043620|TK1151|CDS

ATGGCCGCTCCACCAGCAAGAGCACGAGCAGATTATGATTACCTCATAAAGCTCCTCTTGATTGGCGACAGCGGTGTGGGAAAGAGTTGCCTTCTTTTGCGATTTTCTGATGGATCTTTCACTACAAGCTTCATCACTACCATCGGTATTGATTTTAAGATAAGAACAATTGAACTTGATGGCAAACGGATCAAACTCCAAATCTGGGACACAGCTGGTCAGGAACGATTCCGAACAATCACAACTGCTTACTATAGGGG...

Protein

Download Protein FASTA

181 aa · TkA04G043620|TK1151|PROTEIN

MAAPPARARADYDYLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFSIATDIKQRL

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkA04G043620
TK1151 IDTkA04G043620
OH-1004 IDLXL04_000526
Relationship / confidenceNon Reciprocal Best Hit / Complex relationship
Protein identity (%)98.900
Protein coverage (%)TK1151 100.000 / OH-1004 83.796
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA04G043620
LocationChr04:11740308-11741678 (-)
DescriptionSimilar to RABE1C: Ras-related protein RABE1c
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At3g46060 Involved in membrane trafficking from the Golgi to the plasma membrane. No verified direct reference in this release
At3g53610 Involved in membrane trafficking from the Golgi to the plasma membrane. No verified direct reference in this release
At5g03520 Involved in membrane trafficking from the Golgi to the plasma membrane. No verified direct reference in this release
At3g09900 Involved in membrane trafficking from the Golgi to the plasma membrane. No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_000526 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0006887 exocytosis Biological Process
GO:0009873 ethylene-activated signaling pathway Biological Process
GO:0015031 protein transport Biological Process
GO:0000139 Golgi membrane Cellular Component
GO:0000325 plant-type vacuole Cellular Component
GO:0005829 cytosol Cellular Component
GO:0005886 plasma membrane Cellular Component
GO:0016020 membrane Cellular Component
GO:0003924 GTPase activity Molecular Function
GO:0005525 GTP binding Molecular Function
KEGG gene cross-reference
ath:AT3G09900
ath:AT3G46060
ath:AT3G53610
ath:AT5G03520
bvg:104900163
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.555
Rank 1 · TkA04G043620 · TK1151
Golgi apparatus0.423
Rank 2 · TkA04G043620 · TK1151
Cell membrane0.168
Rank 3 · TkA04G043620 · TK1151
Lysosome / Vacuole0.160
Rank 4 · TkA04G043620 · TK1151
Endoplasmic reticulum0.140
Rank 5 · TkA04G043620 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00025Arf16-144 aa
PF00493MCM16-44 aa
PF00071Ras17-178 aa
PF08477Roc17-131 aa
PF00009GTP_EFTU17-32 aa
PF04670Gtr1_RagA17-132 aa
PF10662PduV-EutP17-169 aa
PF02421FeoB_N17-169 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA04G043620PF00025Arf161443.2e-1556.8
TkA04G043620PF00493MCM16440.1312.1
TkA04G043620PF00071Ras171784.5e-68228.6
TkA04G043620PF08477Roc171312.9e-35121.8
TkA04G043620PF00009GTP_EFTU17321.7e-0731.7
TkA04G043620PF04670Gtr1_RagA171320.0002321.4
TkA04G043620PF10662PduV-EutP171690.1113.1
TkA04G043620PF02421FeoB_N171690.1112.8
TkA04G043620PF01926MMR_HSR1181291e-0526.4
TkA04G043620PF13555AAA_2918320.05114.1
TkA04G043620PF13401AAA_2218370.2412.4
TkA04G043620PF03193RsgA_GTPase19366.1e-0523.6
TkA04G043620PF00009GTP_EFTU491731.7e-0731.7
TkA04G043620PF00493MCM83970.1312.1
TkA04G043620PF13124DUF3963941130.311.8
TkA04G043620PF03193RsgA_GTPase1111736.1e-0523.6

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
P28186Arabidopsis thalianasp|P28186|RAE1C_ARATH Ras-related protein RABE1c97.800%Swiss-ProtHigh
O24466Arabidopsis thalianasp|O24466|RAE1A_ARATH Ras-related protein RABE1a97.200%Swiss-ProtHigh
Q9LZD4Arabidopsis thalianasp|Q9LZD4|RAE1D_ARATH Ras-related protein RABE1d93.400%Swiss-ProtHigh
Q9SF91Arabidopsis thalianasp|Q9SF91|RAE1E_ARATH Ras-related protein RABE1e93.400%Swiss-ProtHigh

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