TkA04G041210 | RubberDandelionOmics

Gene overview

TkA04G041210

Reference: TK1151 Chr: Chr04 Coordinates: 11033765-11035136 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1119 bp · TkA04G041210|TK1151|cDNA

TTGATAATAGGATTGATGCTAAGAGGACTTTACGGGAAATCAAACTCCTCTGCCATATGGATCATGACAACGTAACCACAATTTTACATCCATTACCATCATCTTCTTCTTCCACAATCGATCTATAATTACGTCTAATTTGGCAATGCTTTGCAGATCGTCAAAATCAAAGACATCATACGGCCACCAGAGAAAGAGAAGTTCAATGACGTGTATATCGTGTACGAGTTAATGGACACCGATCTTCATCAAATCATTCG...

CDS

Download CDS FASTA

510 bp · TkA04G041210|TK1151|CDS

ATGACCGAATACGTCGTCACCAGGTGGTACAGAGCCCCCGAATTGCTGCTAAATTGCTCAGAGTACACTGCCGCCATTGATATCTGGTCAGTTGGTTGCATTTTAATGGAGATTCTTCTGCGGGAACCTCTTTTTCCCGGAAAAGATTACGTTCAGCAGTTAGCACTTATCACCAAGCTTTTAGGTTCTCCAGATGATTCAGATCTAGGGTTTCTTAGGAGCGATAACGCGCGAAGATATGTAAAACAGCTTCCTCATGT...

Protein

Download Protein FASTA

169 aa · TkA04G041210|TK1151|PROTEIN

MTEYVVTRWYRAPELLLNCSEYTAAIDIWSVGCILMEILLREPLFPGKDYVQQLALITKLLGSPDDSDLGFLRSDNARRYVKQLPHVPKTSFQQKFPNVSHVAMDLAQRMLVFDPAKRITVDEALNHPMVRSLHEINEEPTCPCPFVFDFEQASSLSEEEVKELIGKSL

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA04G041210`
TK1151 ID	TkA04G041210
OH-1004 ID	LXL04_036492
Relationship / confidence	Sequence Supported Annotation Or Model Conflict / Review
Protein identity (%)	98.200
Protein coverage (%)	TK1151 98.817 / OH-1004 44.385 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

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Basic Information and Functional Annotation

Gene ID TkA04G041210

Location Chr04:11033765-11035136 (+)

Description Similar to NTF6: Mitogen-activated protein kinase homolog NTF6

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At1g07880`	MKK6-MPK13 module positively regulates lateral root formation.	AtMKK6 and AtMPK13 are required for lateral root formation in Arabidopsis.2011 · DOI: 10.4161/psb.6.10.17089
`At1g01560`	Mitogen-activated protein kinase 11.	No verified direct reference in this release

Rice

Reference gene ID	Possible function	Papers / DOI
`Os10g0533600`	Mitogen-activated protein kinase 6.	No verified direct reference in this release
`Os08g0157000`	Mitogen-activated protein kinase 2.	No verified direct reference in this release

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_036492 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0007165 signal transduction Biological Process

GO:0009611 response to wounding Biological Process

GO:0010225 response to UV-C Biological Process

GO:0010311 lateral root formation Biological Process

GO:0035556 intracellular signal transduction Biological Process

GO:0005634 nucleus Cellular Component

GO:0005737 cytoplasm Cellular Component

GO:0005739 mitochondrion Cellular Component

GO:0004674 protein serine/threonine kinase activity Molecular Function

GO:0004707 MAP kinase activity Molecular Function

GO:0004713 protein tyrosine kinase activity Molecular Function

GO:0005524 ATP binding Molecular Function

KEGG gene cross-reference

ath:AT1G07880

dosa:Os08g0157000

dosa:Os10g0533600

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.677

Rank 1 · TkA04G041210 · TK1151

Cytoplasm0.573

Rank 2 · TkA04G041210 · TK1151

Mitochondrion0.042

Rank 3 · TkA04G041210 · TK1151

Cell membrane0.041

Rank 4 · TkA04G041210 · TK1151

Endoplasmic reticulum0.027

Rank 5 · TkA04G041210 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00069Pkinase1-129 aa

PF07714PK_Tyr_Ser-Thr7-40 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA04G041210	`PF00069`	Pkinase	1	129	4.4e-21	76.2
TkA04G041210	`PF07714`	PK_Tyr_Ser-Thr	7	40	0.0097	16.0

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`Q9LQQ9`	Arabidopsis thaliana	sp\|Q9LQQ9\|MPK13_ARATH Mitogen-activated protein kinase 13	77.200%	Swiss-Prot	High
`Q9LMM5`	Arabidopsis thaliana	sp\|Q9LMM5\|MPK11_ARATH Mitogen-activated protein kinase 11	75.800%	Swiss-Prot	High
`Q336X9`	Oryza sativa subsp. japonica	sp\|Q336X9\|MPK6_ORYSJ Mitogen-activated protein kinase 6	72.500%	Swiss-Prot	High
`Q5J4W4`	Oryza sativa subsp. japonica	sp\|Q5J4W4\|MPK2_ORYSJ Mitogen-activated protein kinase 2	74.900%	Swiss-Prot	High

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