RubberDandelionOmics Rubber Dandelion Multi-omics Website
More
Transcriptome Expression Annotation Rubber Pathway TF Prediction Targets Protein Network Resequencing Tools Downloads
ZH EN

How to use this page

Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA04G037840
Reference: TK1151 Chr: Chr04 Coordinates: 10132936-10135380 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

1325 bp · TkA04G037840|TK1151|cDNA

TTTAAAAGCCACTATTTAAAAAAAATAATGATAAAGAAAAAATAAAAAAGCGATTACACTGTTCTTCCGTGTATAAGAAATCGGCACTTGTAGTGGCCTTAGTAAACGCACAGAAAAATCTGCTCCATCGAAATCAGTGTAATTTTGGGAATTTCATGGTCATCGGAACCGCGTTTGCAGATTGCGATTAGTGTTTCTTTTTCATTTTTATCGATTTTGACTAAAAAACTTTCGGAGCGTTTGATGAGAGTTTAATTTCT...

CDS

Download CDS FASTA

516 bp · TkA04G037840|TK1151|CDS

ATGACATTTGCTGATGGCAAAACTACCATGTGTCTTCAAGAAAGGAAAGCAAGCATCAAAGAGTTTTACGATGTTATATTTCCTTCGATATTGCAATTACAAAGTGGGATAACGGATTTGGAAGAGAGGAAACAAAAGGAAATATGCTCGAAAAGATATTCAAGAAAAGATAGTCTCGATAAGGGAAAAGTCTCGGATATTGATTTTGAAAGAGAAATCGAATGCGGGATTTGCATGGAAACAAATAGTCGAGTTGTGTT...

Protein

Download Protein FASTA

171 aa · TkA04G037840|TK1151|PROTEIN

MTFADGKTTMCLQERKASIKEFYDVIFPSILQLQSGITDLEERKQKEICSKRYSRKDSLDKGKVSDIDFEREIECGICMETNSRVVLPNCSHSLCLKCYRDWHERSRSCPFCRDSLKEVNVNDLWICIEASEIIDLSIISKENKKRLFMYIEKLPLIIPSAICDLSDSHLR

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

Download Gene (CDS) Download Protein

ID Mapping

Input IDTkA04G037840
TK1151 IDTkA04G037840
OH-1004 IDLXL04_036546
Relationship / confidenceMulti Source To Oh1004 / Complex relationship
Protein identity (%)100.000
Protein coverage (%)TK1151 100.000 / OH-1004 70.082
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA04G037840
LocationChr04:10132936-10135380 (+)
DescriptionSimilar to AIRP2: E3 ubiquitin-protein ligase AIRP2
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At5g01520 Possesses E3 ubiquitin-protein ligase activity in vitro when associated with the E2 enzyme UBC8 in vitro.
The Arabidopsis RING E3 ubiquitin ligase AtAIRP2 plays combinatory roles with AtAIRP1 in abscisic acid-mediated drought stress responses.2011 · DOI: 10.1104/pp.111.185595
AtAIRP2 E3 Ligase Affects ABA and High-Salinity Responses by Stimulating Its ATP1/SDIRIP1 Substrate Turnover.2017 · DOI: 10.1104/pp.17.00467

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_036546 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0006355 regulation of DNA-templated transcription Biological Process
GO:0006511 ubiquitin-dependent protein catabolic process Biological Process
GO:0009651 response to salt stress Biological Process
GO:0009737 response to abscisic acid Biological Process
GO:0009789 positive regulation of abscisic acid-activated signaling pathway Biological Process
GO:0051865 protein autoubiquitination Biological Process
GO:0005634 nucleus Cellular Component
GO:0005829 cytosol Cellular Component
GO:0016020 membrane Cellular Component
GO:0004842 ubiquitin-protein transferase activity Molecular Function
GO:0008270 zinc ion binding Molecular Function
GO:0061630 ubiquitin protein ligase activity Molecular Function
KEGG gene cross-reference
ath:AT5G01520
bta:539455
cfa:476852
mmu:67150
rno:308900
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.504
Rank 1 · TkA04G037840 · TK1151
Cytoplasm0.436
Rank 2 · TkA04G037840 · TK1151
Mitochondrion0.067
Rank 3 · TkA04G037840 · TK1151
Cell membrane0.064
Rank 4 · TkA04G037840 · TK1151
Golgi apparatus0.038
Rank 5 · TkA04G037840 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF25447RING_ZNF59835-35 aa
PF16685zf-RING_1041-52 aa
PF01020Ribosomal_L40e43-55 aa
PF00097zf-C3HC448-57 aa
PF14634zf-RING_548-55 aa
PF14447Prok-RING_448-56 aa
PF17978zf-RING_1470-102 aa
PF25447RING_ZNF59872-120 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA04G037840PF25447RING_ZNF59835350.4211.7
TkA04G037840PF16685zf-RING_1041520.1712.7
TkA04G037840PF01020Ribosomal_L40e43550.1113.2
TkA04G037840PF00097zf-C3HC448574.4e-0627.2
TkA04G037840PF14634zf-RING_548551.5e-0525.5
TkA04G037840PF14447Prok-RING_448568.8e-0523.0
TkA04G037840PF17978zf-RING_14701020.05214.7
TkA04G037840PF25447RING_ZNF598721200.4211.7
TkA04G037840PF13920zf-C3HC4_3731184.2e-1040.0
TkA04G037840PF05290Baculo_IE-1731210.04514.4
TkA04G037840PF13639zf-RING_2741132.5e-0834.7
TkA04G037840PF13923zf-C3HC4_2741121.4e-0525.5
TkA04G037840PF14634zf-RING_5741131.5e-0525.5
TkA04G037840PF12678zf-rbx1741130.0001722.5
TkA04G037840PF17123zf-RING_1174931.79.1
TkA04G037840PF00097zf-C3HC4751124.4e-0627.2

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
Q9M022Arabidopsis thalianasp|Q9M022|AIRP2_ARATH E3 ubiquitin-protein ligase AIRP266.500%Swiss-ProtHigh

JBrowse

View in Genome Browser