RubberDandelionOmics Rubber Dandelion Multi-omics Website
More
Transcriptome Expression Annotation Rubber Pathway TF Prediction Targets Protein Network Resequencing Tools Downloads
ZH EN

How to use this page

Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA04G035010
Reference: TK1151 Chr: Chr04 Coordinates: 9397954-9403363 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

474 bp · TkA04G035010|TK1151|cDNA

ATGGCCGTGGGTGCTCGGAGTAGCTCTACTGCTGCTCTTGATGCAGCCATCGAATACGAAATACGAATGGGTACGATAGACCCCAATATGGACAAGAAATCCATGAGACGGATCATTTCGAATCGTTATGCTGCCAAGAAATCTCATGAGAAAAAGGTCAACAAACTAATTGAATTAGAGAACAATCGGAAACATCTAGAGAAGACTATAGCTGCCCTGCATCCTCTGATAGAATATGAAAGTCAACTTTTATCACGTTT...

CDS

Download CDS FASTA

474 bp · TkA04G035010|TK1151|CDS

ATGGCCGTGGGTGCTCGGAGTAGCTCTACTGCTGCTCTTGATGCAGCCATCGAATACGAAATACGAATGGGTACGATAGACCCCAATATGGACAAGAAATCCATGAGACGGATCATTTCGAATCGTTATGCTGCCAAGAAATCTCATGAGAAAAAGGTCAACAAACTAATTGAATTAGAGAACAATCGGAAACATCTAGAGAAGACTATAGCTGCCCTGCATCCTCTGATAGAATATGAAAGTCAACTTTTATCACGTTT...

Protein

Download Protein FASTA

157 aa · TkA04G035010|TK1151|PROTEIN

MAVGARSSSTAALDAAIEYEIRMGTIDPNMDKKSMRRIISNRYAAKKSHEKKVNKLIELENNRKHLEKTIAALHPLIEYESQLLSRLRIENENLTHQLQIHMDLQNKKEAQIAEKTMERQFLTGIMNMQVQQQPDIINGGTDPVFDPLDFDPNHFPY

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

Download Gene (CDS) Download Protein

ID Mapping

Input IDTkA04G035010
TK1151 IDTkA04G035010
OH-1004 IDLXL04_036590
Relationship / confidenceSequence Supported Annotation Or Model Conflict / Review
Protein identity (%)100.000
Protein coverage (%)TK1151 100.000 / OH-1004 40.779
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA04G035010
LocationChr04:9397954-9403363 (-)
DescriptionProtein of unknown function
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

No hit for this species in the current source table.

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_036590 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)No functional description available
KEGG gene cross-referenceNo functional description available
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.940
Rank 1 · TkA04G035010 · TK1151
Cytoplasm0.163
Rank 2 · TkA04G035010 · TK1151
Cell membrane0.022
Rank 3 · TkA04G035010 · TK1151
Endoplasmic reticulum0.012
Rank 4 · TkA04G035010 · TK1151
Mitochondrion0.010
Rank 5 · TkA04G035010 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF07716bZIP_231-74 aa
PF22105DUF694332-76 aa
PF08889WbqC33-119 aa
PF03131bZIP_Maf33-83 aa
PF00170bZIP_133-78 aa
PF06156YabA53-115 aa
PF27823SCD2_helical_N55-109 aa
PF31275TEX5158-126 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA04G035010PF07716bZIP_231745.9e-0523.8
TkA04G035010PF22105DUF694332762.59.0
TkA04G035010PF08889WbqC331190.004217.7
TkA04G035010PF03131bZIP_Maf33830.005617.9
TkA04G035010PF00170bZIP_133780.005617.5
TkA04G035010PF06156YabA531150.6711.3
TkA04G035010PF27823SCD2_helical_N551090.03415.0
TkA04G035010PF31275TEX51581260.006516.9
TkA04G035010PF22105DUF6943821062.59.0
TkA04G035010PF07716bZIP_283975.9e-0523.8
TkA04G035010PF00170bZIP_187990.005617.5
TkA04G035010PF27823SCD2_helical_N881210.03415.0
TkA04G035010PF03131bZIP_Maf1041110.005617.9

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

No result was found for this query.

JBrowse

View in Genome Browser