TkA04G033810 | RubberDandelionOmics

Gene overview

TkA04G033810

Reference: TK1151 Chr: Chr04 Coordinates: 9062225-9066371 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

3916 bp · TkA04G033810|TK1151|cDNA

AAAAAAACAGAATACACCAAAACCAACAAATTAAATGTCAATTGCGGATGATGGCTGAAATTGGAGGCAATCACATGGCAGTGCGACTTGCAGCGTTCACAATATCAGAGATCTTCAGAACTCAGATGTTGCAGAGATTCATAAGATAAAACCCAAAGCAGTGTACAGCTTCTAATGCTAAAGGTACAAGTCAATATTGCCTCAATGCTACAGAGAAATGATTTAGGTTCTTAACTGTTTTCCTTCTACTCCACAATTTT...

CDS

Download CDS FASTA

1047 bp · TkA04G033810|TK1151|CDS

ATGAAATGTTTCACGATGCTTCGTTTTTCCTTCCTGTTGTTAATACTACTTGACGTTCCATCAATCACAACCCAGAAAAAATTTCCCGCCATTCTCATATTTGGCGATTCAACAGTCGACACAGGCAACAACAATTACATAAATACCCCTATCAAAGCCAACCACTACCCTTACGGAATAGACTACCCAGGCCGCATCCCTACCGGCAGGTTTTCAAACGGGAAGCTATCTGTCGACTTCCTAGCGTCTCACCTAGGGAT...

Protein

Download Protein FASTA

348 aa · TkA04G033810|TK1151|PROTEIN

MKCFTMLRFSFLLLILLDVPSITTQKKFPAILIFGDSTVDTGNNNYINTPIKANHYPYGIDYPGRIPTGRFSNGKLSVDFLASHLGIKQSIPPFLQPDLPPNELGTGVSFASGGTGYDDLTAHVTGILPLSQQIIYFKNYTARLNNLIGEKEAKRIINRALVSLSAGTNDFIFNFYDIPTRRTVFNIDSYQEFIIERIHNFIKELYNLGARTIIVTGLPPVGCLPLQITSRFGRRCVEKQNVEARAYNRKLLELLPRVQT...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA04G033810`
TK1151 ID	TkA04G033810
OH-1004 ID	LXL04_000683
Relationship / confidence	Non Reciprocal Best Hit / Complex relationship
Protein identity (%)	58.000
Protein coverage (%)	TK1151 85.057 / OH-1004 26.270 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

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Basic Information and Functional Annotation

Gene ID TkA04G033810

Location Chr04:9062225-9066371 (+)

Description Similar to At1g58430: GDSL esterase/lipase At1g58430

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At2g30310`	GDSL esterase/lipase At2g30310.	No verified direct reference in this release
`At1g58430`	GDSL esterase/lipase At1g58430.	No verified direct reference in this release
`At2g30220`	GDSL esterase/lipase At2g30220.	No verified direct reference in this release
`At2g24560`	GDSL esterase/lipase At2g24560.	No verified direct reference in this release
`At2g31550`	GDSL esterase/lipase At2g31550.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_000683 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0016042 lipid catabolic process Biological Process

GO:0005576 extracellular region Cellular Component

GO:0009507 chloroplast Cellular Component

GO:0016788 hydrolase activity, acting on ester bonds Molecular Function

KEGG gene cross-reference

ath:AT1G58430

ath:AT2G24560

ath:AT2G30220

ath:AT2G31540

ath:AT2G31550

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Extracellular0.534

Rank 1 · TkA04G033810 · TK1151

Lysosome / Vacuole0.147

Rank 2 · TkA04G033810 · TK1151

Endoplasmic reticulum0.099

Rank 3 · TkA04G033810 · TK1151

Cytoplasm0.097

Rank 4 · TkA04G033810 · TK1151

Cell membrane0.049

Rank 5 · TkA04G033810 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00657Lipase_GDSL31-339 aa

PF13472Lipase_GDSL_233-40 aa

PF13472Lipase_GDSL_2158-235 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA04G033810	`PF00657`	Lipase_GDSL	31	339	1.5e-35	124.0
TkA04G033810	`PF13472`	Lipase_GDSL_2	33	40	0.0099	17.1
TkA04G033810	`PF13472`	Lipase_GDSL_2	158	235	0.0099	17.1

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`O22927`	Arabidopsis thaliana	sp\|O22927\|GDL42_ARATH GDSL esterase/lipase At2g30310	55.200%	Swiss-Prot	High
`Q9C648`	Arabidopsis thaliana	sp\|Q9C648\|GDL23_ARATH GDSL esterase/lipase At1g58430	55.300%	Swiss-Prot	High
`O22918`	Arabidopsis thaliana	sp\|O22918\|GDL41_ARATH GDSL esterase/lipase At2g30220	52.200%	Swiss-Prot	High
`Q9SJA9`	Arabidopsis thaliana	sp\|Q9SJA9\|GDL39_ARATH GDSL esterase/lipase At2g24560	54.300%	Swiss-Prot	High
`Q9SIQ2`	Arabidopsis thaliana	sp\|Q9SIQ2\|GDL44_ARATH GDSL esterase/lipase At2g31550	54.500%	Swiss-Prot	High

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