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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA04G031960
Reference: TK1151 Chr: Chr04 Coordinates: 8431737-8433044 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

972 bp · TkA04G031960|TK1151|cDNA

ATGTCGAATCACGGAACGACAAAACGATTCTTGATCCGAGAAATGGATCGAAGCATCAAACAAATGATGAAGCTAGTCGAAGAAGAAGGAGGAGATTCATTCGCCAAGAAAGCCGAAATTTATTGCCAAAAGAGACCAAAACTCGTATCTCATGTCGAAGAATTTTACCGAATGTTCCGATCATTGGCCGAGCGTTACCATGAAGCCAAAGTCGAGGTGTTTTCCGAACCACCTTCCGCCATGACATCTCCTGATCGGAG...

CDS

Download CDS FASTA

972 bp · TkA04G031960|TK1151|CDS

ATGTCGAATCACGGAACGACAAAACGATTCTTGATCCGAGAAATGGATCGAAGCATCAAACAAATGATGAAGCTAGTCGAAGAAGAAGGAGGAGATTCATTCGCCAAGAAAGCCGAAATTTATTGCCAAAAGAGACCAAAACTCGTATCTCATGTCGAAGAATTTTACCGAATGTTCCGATCATTGGCCGAGCGTTACCATGAAGCCAAAGTCGAGGTGTTTTCCGAACCACCTTCCGCCATGACATCTCCTGATCGGAG...

Protein

Download Protein FASTA

323 aa · TkA04G031960|TK1151|PROTEIN

MSNHGTTKRFLIREMDRSIKQMMKLVEEEGGDSFAKKAEIYCQKRPKLVSHVEEFYRMFRSLAERYHEAKVEVFSEPPSAMTSPDRRLSRRLSEIPNFDYFKAGYETPTNESESDSDDSIFQSYSNSSNYRRLRKKIVELEAELRKVQMEHEENRSNSEIEYYAEELRMANEKITSLEEEIVRLRMKLQNYESFEHSRDDISDESNLKMDREGLASRISELEEEMSLKDDQIDEMNDRLEKLHLENQKSINYADELRNRS...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkA04G031960
TK1151 IDTkA04G031960
OH-1004 IDLXL04_036653
Relationship / confidenceMulti Source To Oh1004 / Complex relationship
Protein identity (%)72.500
Protein coverage (%)TK1151 99.071 / OH-1004 60.364
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA04G031960
LocationChr04:8431737-8433044 (+)
DescriptionSimilar to NET4B: Protein NETWORKED 4B
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At5g58320 Plant-specific actin binding protein. No verified direct reference in this release
At2g30500 Plant-specific actin binding protein. No verified direct reference in this release
At3g22790 Plant-specific actin binding protein.
A superfamily of actin-binding proteins at the actin-membrane nexus of higher plants.2012 · DOI: 10.1016/j.cub.2012.06.041
At1g03080 Plant-specific actin binding protein. No verified direct reference in this release
At4g02710 Plant-specific actin binding protein. No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_036653 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0005576 extracellular region Cellular Component
GO:0005634 nucleus Cellular Component
GO:0005737 cytoplasm Cellular Component
GO:0005774 vacuolar membrane Cellular Component
GO:0005856 cytoskeleton Cellular Component
GO:0005886 plasma membrane Cellular Component
GO:0009506 plasmodesma Cellular Component
GO:0003779 actin binding Molecular Function
GO:0051015 actin filament binding Molecular Function
KEGG gene cross-reference
ath:AT1G03080
ath:AT2G30500
ath:AT3G22790
ath:AT4G14760
ath:AT5G58320
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.654
Rank 1 · TkA04G031960 · TK1151
Nucleus0.305
Rank 2 · TkA04G031960 · TK1151
Cell membrane0.103
Rank 3 · TkA04G031960 · TK1151
Mitochondrion0.039
Rank 4 · TkA04G031960 · TK1151
Golgi apparatus0.036
Rank 5 · TkA04G031960 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF07445PriC3-183 aa
PF31092EcoKI_5th4-52 aa
PF28662PROH4_C7-34 aa
PF22790YkoP8-29 aa
PF07765KIP112-66 aa
PF27935CCDC61_coil13-28 aa
PF28175T4SS_LegC2C732-56 aa
PF29997SPC25_N43-63 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA04G031960PF07445PriC31831.89.1
TkA04G031960PF31092EcoKI_5th4520.212.9
TkA04G031960PF28662PROH4_C7341.89.8
TkA04G031960PF22790YkoP8290.03414.1
TkA04G031960PF07765KIP112661.2e-1970.9
TkA04G031960PF27935CCDC61_coil13284.48.6
TkA04G031960PF28175T4SS_LegC2C732566.56.2
TkA04G031960PF29997SPC25_N43630.0315.4
TkA04G031960PF13334DUF4094961460.3712.0
TkA04G031960PF10473CENP-F_leu_zip1152069.27.0
TkA04G031960PF28662PROH4_C1231231.89.8
TkA04G031960PF07765KIP11241541.2e-1970.9
TkA04G031960PF20237DUF65941241981.39.5
TkA04G031960PF25762HAUS11251930.959.9
TkA04G031960PF28175T4SS_LegC2C71251966.56.2
TkA04G031960PF29997SPC25_N1271900.0315.4

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
F4KEW8Arabidopsis thalianasp|F4KEW8|NET4A_ARATH Protein NETWORKED 4A37.000%Swiss-ProtLow
Q84VY2Arabidopsis thalianasp|Q84VY2|NET4B_ARATH Protein NETWORKED 4B47.300%Swiss-ProtLow
Q9LUI2Arabidopsis thalianasp|Q9LUI2|NET1A_ARATH Protein NETWORKED 1A54.800%Swiss-ProtLow
F4HZB5Arabidopsis thalianasp|F4HZB5|NET1D_ARATH Protein NETWORKED 1D41.800%Swiss-ProtLow
Q9ZQX8Arabidopsis thalianasp|Q9ZQX8|NET1C_ARATH Protein NETWORKED 1C55.200%Swiss-ProtLow

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