TkA04G029920 | RubberDandelionOmics

Gene overview

TkA04G029920

Reference: TK1151 Chr: Chr04 Coordinates: 7906260-7913102 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

696 bp · TkA04G029920|TK1151|cDNA

AAATGGAAAGGCTACCATCGCTACTTTCACCACTCTCCTCTTTCCGTTCATCCGTAGCACTCCGCCCAGCCGTCGCCGCCGCTCGTTTCCATATCACAAGAGCTTCATTTGGTTCATCCACTCAGATGGAGGCGGAACATTATAAATTTGGACCGTACAAAATTGATCCAAGGGAAGTGTTTTACTCTACTGATCTTTCATATGCTTTGGTCAATCTCCGCCCTCTTCTTCCTGGTCATATCCTTGAACAAATATAAATT...

CDS

Download CDS FASTA

420 bp · TkA04G029920|TK1151|CDS

ATGCTTTGGTCAATCTCCGCCCTCTTCTTCCTGGTCATATCCTTGAACAAATATAAATTGGGATCGCTTGCATATACACGTGAAGTGAAGCGATTTGTTGACCTAACCACAGAGGAGACGAGTGATTTGTGGATTTCAGCTCAAAAAATTGGTAAACAGCTTGAGAATCACCACAAAGCTTCTTCACTTACATTTTCAATCCAAGATGGGCCCCAGGCAGGACAGACAGTTCCTCATGTTCATATCCACATTGTTCCTCG...

Protein

Download Protein FASTA

139 aa · TkA04G029920|TK1151|PROTEIN

MLWSISALFFLVISLNKYKLGSLAYTREVKRFVDLTTEETSDLWISAQKIGKQLENHHKASSLTFSIQDGPQAGQTVPHVHIHIVPRKGGDFENNDEIYDAIDEKEKELKKTLDLDKERKDRSMEEMAKEADEYRKLFS

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA04G029920`
TK1151 ID	TkA04G029920
OH-1004 ID	LXL04_036666
Relationship / confidence	Rbh High Identity Coverage Synteny / Strict
Protein identity (%)	100.000
Protein coverage (%)	TK1151 100.000 / OH-1004 81.765 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID TkA04G029920

Location Chr04:7906260-7913102 (-)

Description Similar to FHIT: Bifunctional bis(5'-adenosyl)-triphosphatase/adenylylsulfatase FHIT

Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At5g58240`	Possesses dinucleoside triphosphate hydrolase activity.	Fhit proteins can also recognize substrates other than dinucleoside polyphosphates.2008 · DOI: 10.1016/j.febslet.2008.07.060

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_036666 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0002188 translation reinitiation Biological Process

GO:0006139 nucleobase-containing compound metabolic process Biological Process

GO:0006163 purine nucleotide metabolic process Biological Process

GO:0006260 DNA replication Biological Process

GO:0006351 DNA-templated transcription Biological Process

GO:0015964 diadenosine triphosphate catabolic process Biological Process

GO:0032435 negative regulation of proteasomal ubiquitin-dependent protein catabolic process Biological Process

GO:0043605 amide catabolic process Biological Process

GO:0005634 nucleus Cellular Component

GO:0005737 cytoplasm Cellular Component

GO:0005739 mitochondrion Cellular Component

GO:0005829 cytosol Cellular Component

KEGG gene cross-reference

ath:AT5G58240

bta:692183

cel:CELE_Y56A3A.13

ddi:DDB_G0274257

rno:60398

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Peroxisome0.329

Rank 1 · TkA04G029920 · TK1151

Cytoplasm0.320

Rank 2 · TkA04G029920 · TK1151

Mitochondrion0.309

Rank 3 · TkA04G029920 · TK1151

Nucleus0.163

Rank 4 · TkA04G029920 · TK1151

Cell membrane0.048

Rank 5 · TkA04G029920 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF01230HIT27-88 aa

PF14836Ubiquitin_327-50 aa

PF14836Ubiquitin_3100-133 aa

PF01230HIT108-136 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA04G029920	`PF01230`	HIT	27	88	1.3e-15	58.5
TkA04G029920	`PF14836`	Ubiquitin_3	27	50	0.21	12.2
TkA04G029920	`PF14836`	Ubiquitin_3	100	133	0.21	12.2
TkA04G029920	`PF01230`	HIT	108	136	1.3e-15	58.5

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`F4KEV7`	Arabidopsis thaliana	sp\|F4KEV7\|FHIT_ARATH Bifunctional bis(5'-adenosyl)-triphosphatase/adenylylsulfatase FHIT	75.000%	Swiss-Prot	High

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