TkA04G024710 | RubberDandelionOmics

Gene overview

TkA04G024710

Reference: TK1151 Chr: Chr04 Coordinates: 6416992-6417567 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

354 bp · TkA04G024710|TK1151|cDNA

ATGTTTCTAAGTGTTCCGAAAGGAGATGTAATCTTCATGAAGGATATTACACACGATTGGGGTGATGATTACTGCATCAAGCTATTAAAAAATTGTTGGAAGGCGTTGCCAGAGGGTGGTAAGGTGGTGGTGCTAGAGACTATAGTCCCGGAGCAACACCCAACTAATAATGGTGAAAGTGAGGTTATGTCTAATCTTGATGGTGACATGGTGATGTTGACTATAAATCCTGGTGGCAAAGAGAGGACTGCTAAAGAATA...

CDS

Download CDS FASTA

354 bp · TkA04G024710|TK1151|CDS

ATGTTTCTAAGTGTTCCGAAAGGAGATGTAATCTTCATGAAGGATATTACACACGATTGGGGTGATGATTACTGCATCAAGCTATTAAAAAATTGTTGGAAGGCGTTGCCAGAGGGTGGTAAGGTGGTGGTGCTAGAGACTATAGTCCCGGAGCAACACCCAACTAATAATGGTGAAAGTGAGGTTATGTCTAATCTTGATGGTGACATGGTGATGTTGACTATAAATCCTGGTGGCAAAGAGAGGACTGCTAAAGAATA...

Protein

Download Protein FASTA

117 aa · TkA04G024710|TK1151|PROTEIN

MFLSVPKGDVIFMKDITHDWGDDYCIKLLKNCWKALPEGGKVVVLETIVPEQHPTNNGESEVMSNLDGDMVMLTINPGGKERTAKEYETLAKESGFVSSNIVCSVSFYSIMEFRKKT

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA04G024710`
TK1151 ID	TkA04G024710
OH-1004 ID	LXL04_036781
Relationship / confidence	Sequence Supported Annotation Or Model Conflict / Review
Protein identity (%)	97.400
Protein coverage (%)	TK1151 100.000 / OH-1004 32.055 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

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Basic Information and Functional Annotation

Gene ID TkA04G024710

Location Chr04:6416992-6417567 (-)

Description Similar to COMT1: Caffeic acid 3-O-methyltransferase

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At5g54160`	Methylates OH residues of flavonoid compounds.	Functional expression of an Arabidopsis cDNA clone encoding a flavonol 3'-O-methyltransferase and characterization of the gene product.2000 · DOI: 10.1006/abbi.1999.1681 A new Arabidopsis thaliana mutant deficient in the expression of O-methyltransferase impacts lignins and sinapoyl esters.2003 · DOI: 10.1023/a:1023022825098 Insights into lignin primary structure and deconstruction from Arabidopsis thaliana COMT (caffeic acid O-methyl transferase) mutant Atomt1.2010 · DOI: 10.1039/c004817h The role of CCoAOMT1 and COMT1 in Arabidopsis anthers.2012 · DOI: 10.1007/s00425-011-1586-6 Caffeic acid O-methyltransferase is involved in the synthesis of melatonin by methylating N-acetylserotonin in Arabidopsis.2014 · DOI: 10.1111/jpi.12160 Cloning of Arabidopsis serotonin N-acetyltransferase and its role with caffeic acid O-methyltransferase in the biosynthesis of melatonin in vitro despite their different subcellular localizations.2014 · DOI: 10.1111/jpi.12181 Daily rhythms of phytomelatonin signaling modulate diurnal stomatal closure via regulating reactive oxygen species dynamics in Arabidopsis.2020 · DOI: 10.1111/jpi.12640 Melatonin Represses Oil and Anthocyanin Accumulation in Seeds.2020 · DOI: 10.1104/pp.20.00117

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_036781 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0006970 response to osmotic stress Biological Process

GO:0007623 circadian rhythm Biological Process

GO:0009809 lignin biosynthetic process Biological Process

GO:0010344 seed oilbody biogenesis Biological Process

GO:0010555 response to mannitol Biological Process

GO:0030187 melatonin biosynthetic process Biological Process

GO:0031537 regulation of anthocyanin metabolic process Biological Process

GO:0032259 methylation Biological Process

GO:0042428 serotonin metabolic process Biological Process

GO:0048354 mucilage biosynthetic process involved in seed coat development Biological Process

GO:0051555 flavonol biosynthetic process Biological Process

GO:0090333 regulation of stomatal closure Biological Process

KEGG gene cross-reference

ath:AT5G54160

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.749

Rank 1 · TkA04G024710 · TK1151

Nucleus0.217

Rank 2 · TkA04G024710 · TK1151

Endoplasmic reticulum0.060

Rank 3 · TkA04G024710 · TK1151

Extracellular0.051

Rank 4 · TkA04G024710 · TK1151

Mitochondrion0.046

Rank 5 · TkA04G024710 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00891Methyltransf_21-96 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA04G024710	`PF00891`	Methyltransf_2	1	96	5.6e-25	88.6

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q9FK25`	Arabidopsis thaliana	sp\|Q9FK25\|OMT1_ARATH Flavone 3'-O-methyltransferase 1	50.900%	Swiss-Prot	High

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