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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA04G023730
Reference: TK1151 Chr: Chr04 Coordinates: 6118383-6120079 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

1503 bp · TkA04G023730|TK1151|cDNA

TTTCAAGACAATCAAGAAGAATAAACCCTTCACAACTATCATTCCTTCCATCACAAACAAACCCCAAAATGTTTGTTTTATCGGAGCAAAATATCCCGAGCCGTAGATGTATCTGGGTCAACGGCCCAGTCATAGTTGGGGCGGGCCCTTCAGGGCTCGCTGTCTCTGCTTGTCTCAGGGAGCAAGGCATTCCTTTCGTCGTCATCGAAAGAGCTGACTGCATTGCTTCACTCTGGCAAAAACGAACCTACGACCGCCTA...

CDS

Download CDS FASTA

1260 bp · TkA04G023730|TK1151|CDS

ATGTTTGTTTTATCGGAGCAAAATATCCCGAGCCGTAGATGTATCTGGGTCAACGGCCCAGTCATAGTTGGGGCGGGCCCTTCAGGGCTCGCTGTCTCTGCTTGTCTCAGGGAGCAAGGCATTCCTTTCGTCGTCATCGAAAGAGCTGACTGCATTGCTTCACTCTGGCAAAAACGAACCTACGACCGCCTAAAACTTCACCTCCCCAAAAAATTCTGTCAACTACCAAAACTACCCTTCCCCGAGGAGTACCCTGAATA...

Protein

Download Protein FASTA

419 aa · TkA04G023730|TK1151|PROTEIN

MFVLSEQNIPSRRCIWVNGPVIVGAGPSGLAVSACLREQGIPFVVIERADCIASLWQKRTYDRLKLHLPKKFCQLPKLPFPEEYPEYPTKKQFITYLENYAKNFDIKPRFNESVQSAKYDKLCGVWRVKTISTTTGPIPFETEYICQKLVVATGENAEGVVPEIEGLQGFSGEVIHAKDYKSGEKYTGKKVLVVGCGNSGMEVSLDLSNHNAKPSMVVRSSVHVLPREIFGKSTFDLAMVLMKWLPLWLVDKLLLILTYL...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkA04G023730
TK1151 IDTkA04G023730
OH-1004 IDLXL04_036811
Relationship / confidenceMulti Source To Oh1004 / Complex relationship
Protein identity (%)99.500
Protein coverage (%)TK1151 100.000 / OH-1004 90.497
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA04G023730
LocationChr04:6118383-6120079 (+)
DescriptionSimilar to YUC8: Probable indole-3-pyruvate monooxygenase YUCCA8
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
At5g43890 Involved in auxin biosynthesis.
Interaction of auxin and ERECTA in elaborating Arabidopsis inflorescence architecture revealed by the activation tagging of a new member of the YUCCA family putative flavin monooxygenases.2005 · DOI: 10.1104/pp.105.063495
At1g04180 Involved in auxin biosynthesis. No verified direct reference in this release
At4g28720 Involved in auxin biosynthesis. No verified direct reference in this release
At1g04610 Involved in auxin biosynthesis. No verified direct reference in this release
At2g33230 Involved in auxin biosynthesis.
Activation of a flavin monooxygenase gene YUCCA7 enhances drought resistance in Arabidopsis.2012 · DOI: 10.1007/s00425-011-1552-3

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_036811 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0009414 response to water deprivation Biological Process
GO:0009635 response to herbicide Biological Process
GO:0009684 indoleacetic acid biosynthetic process Biological Process
GO:0009723 response to ethylene Biological Process
GO:0009735 response to cytokinin Biological Process
GO:0009742 brassinosteroid mediated signaling pathway Biological Process
GO:0009851 auxin biosynthetic process Biological Process
GO:0010262 somatic embryogenesis Biological Process
GO:0010600 regulation of auxin biosynthetic process Biological Process
GO:0005634 nucleus Cellular Component
GO:0004497 monooxygenase activity Molecular Function
GO:0004499 N,N-dimethylaniline monooxygenase activity Molecular Function
KEGG gene cross-reference
ath:AT1G04180
ath:AT1G04610
ath:AT2G33230
ath:AT4G28720
ath:AT5G43890
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.328
Rank 1 · TkA04G023730 · TK1151
Mitochondrion0.281
Rank 2 · TkA04G023730 · TK1151
Nucleus0.149
Rank 3 · TkA04G023730 · TK1151
Endoplasmic reticulum0.122
Rank 4 · TkA04G023730 · TK1151
Cell membrane0.099
Rank 5 · TkA04G023730 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF13738Pyr_redox_321-221 aa
PF13434Lys_Orn_oxgnase21-47 aa
PF07992Pyr_redox_221-62 aa
PF07992Pyr_redox_221-220 aa
PF00070Pyr_redox21-53 aa
PF01494FAD_binding_321-49 aa
PF01266DAO21-50 aa
PF01946Thi421-49 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA04G023730PF13738Pyr_redox_3212214.7e-2589.2
TkA04G023730PF13434Lys_Orn_oxgnase21473.9e-1556.6
TkA04G023730PF07992Pyr_redox_221625.2e-1349.8
TkA04G023730PF07992Pyr_redox_2212205.2e-1349.8
TkA04G023730PF00070Pyr_redox21531.7e-0732.3
TkA04G023730PF01494FAD_binding_321491.4e-0525.2
TkA04G023730PF01266DAO21500.001219.1
TkA04G023730PF01946Thi421490.001418.6
TkA04G023730PF03486HI0933_like21500.001718.6
TkA04G023730PF13454NAD_binding_921600.003718.0
TkA04G023730PF02254TrkA_N21500.006517.5
TkA04G023730PF21799MurD-like_N21480.0614.3
TkA04G023730PF05834Lycopene_cycl21500.09612.5
TkA04G023730PF02558ApbA21500.113.0
TkA04G023730PF00890FAD_binding_221490.1112.4
TkA04G023730PF01488Shikimate_DH21480.1213.2

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
Q9LKC0Arabidopsis thalianasp|Q9LKC0|YUC5_ARATH Probable indole-3-pyruvate monooxygenase YUCCA571.100%Swiss-ProtHigh
O64489Arabidopsis thalianasp|O64489|YUC9_ARATH Probable indole-3-pyruvate monooxygenase YUCCA970.600%Swiss-ProtHigh
Q9SVU0Arabidopsis thalianasp|Q9SVU0|YUC8_ARATH Probable indole-3-pyruvate monooxygenase YUCCA869.600%Swiss-ProtHigh
O23024Arabidopsis thalianasp|O23024|YUC3_ARATH Probable indole-3-pyruvate monooxygenase YUCCA368.600%Swiss-ProtHigh
O49312Arabidopsis thalianasp|O49312|YUC7_ARATH Probable indole-3-pyruvate monooxygenase YUCCA767.900%Swiss-ProtHigh

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