TkA04G023020 | RubberDandelionOmics

Gene overview

TkA04G023020

Reference: TK1151 Chr: Chr04 Coordinates: 5873797-5876007 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1612 bp · TkA04G023020|TK1151|cDNA

CCGCTCTTACAAAATTTCAACAAAACCCGACCGTTTGTCTCTCTCTCTCCTCCTTTGTAATAATGTACATCGTATCTCAATTTTAAACCCTCAAATGCCCAAAAGAAAATCGGAGTAAATCAAGAGCAGGGAGACACATAAGTTGGTGATCTCTAATGGGTTGTTTTCTTGGTTGTTTCGGTTCTTCAAAGGACCGAAAACGAAGAAAAAAGAGGTACAAGGCTATCCCTCGAGATCAATACCCTAAAGTGCAGAATTTT...

CDS

Download CDS FASTA

1182 bp · TkA04G023020|TK1151|CDS

ATGGGTTGTTTTCTTGGTTGTTTCGGTTCTTCAAAGGACCGAAAACGAAGAAAAAAGAGGTACAAGGCTATCCCTCGAGATCAATACCCTAAAGTGCAGAATTTTGTGCAAGCTGATGTATCTTTAGAACAAATCGTCAAAGATATTCCCTCTAATTCACTTCCAGAATCAAGAGAAAAGAACGAGGAGCCATTGAGTTTAAGTACAAGAAAAAAAGTGACATTTGATACAAATGTCACCACCTATGAACATGTTCAAGT...

Protein

Download Protein FASTA

393 aa · TkA04G023020|TK1151|PROTEIN

MGCFLGCFGSSKDRKRRKKRYKAIPRDQYPKVQNFVQADVSLEQIVKDIPSNSLPESREKNEEPLSLSTRKKVTFDTNVTTYEHVQVYDSTESLLEKNEKGEMFPKSAESHSHSDSDSGSGSQVNGPSFPPNYRYGNCLESDDEVEDSETDDGLDEDEEDDYNDEDGIICQEVWCESIPIPIPESRPESRPESSLDKVGSNTNARDRTAYVIPVLNPVENLSQWKALKSKESQPTTPLKVLNSNLHHQKENSSLNSVSTP...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA04G023020`
TK1151 ID	TkA04G023020
OH-1004 ID	LXL04_036831
Relationship / confidence	Multi Source To Oh1004 / Complex relationship
Protein identity (%)	98.500
Protein coverage (%)	TK1151 100.000 / OH-1004 100.000 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

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Basic Information and Functional Annotation

Gene ID TkA04G023020

Location Chr04:5873797-5876007 (+)

Description Similar to JASON: Protein JASON

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At1g06660`	Required for normal spindle orientation at male meiosis II and normal formation of tetrad of microspores.	The Arabidopsis mutant jason produces unreduced first division restitution male gametes through a parallel/fused spindle mechanism in meiosis II.2011 · DOI: 10.1104/pp.110.170415

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_036831 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0006355 regulation of DNA-templated transcription Biological Process

GO:0007142 male meiosis II Biological Process

GO:0009556 microsporogenesis Biological Process

GO:0051295 establishment of meiotic spindle localization Biological Process

GO:0005634 nucleus Cellular Component

GO:0005794 Golgi apparatus Cellular Component

GO:0005886 plasma membrane Cellular Component

GO:0009705 plant-type vacuole membrane Cellular Component

GO:0012505 endomembrane system Cellular Component

KEGG gene cross-reference

ath:AT1G06660

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cell membrane0.420

Rank 1 · TkA04G023020 · TK1151

Cytoplasm0.399

Rank 2 · TkA04G023020 · TK1151

Nucleus0.342

Rank 3 · TkA04G023020 · TK1151

Endoplasmic reticulum0.046

Rank 4 · TkA04G023020 · TK1151

Plastid0.040

Rank 5 · TkA04G023020 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF28805PT774-99 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA04G023020	`PF28805`	PT7	74	99	0.012	16.5

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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Protein	Organism	Description	Identity	Database	Confidence
`F4IDQ5`	Arabidopsis thaliana	sp\|F4IDQ5\|JASON_ARATH Protein JASON	50.000%	Swiss-Prot	Low

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