TkA04G020560 | RubberDandelionOmics

Gene overview

TkA04G020560

Reference: TK1151 Chr: Chr04 Coordinates: 5225719-5229942 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

2347 bp · TkA04G020560|TK1151|cDNA

GAAGTGGAAAGAGAAGCTACGGATTTACCATTTACCGCTAATCATTCCCATTTAAATAATGTATTAGTTAGATTATTTTATCAAATAATCAACAATAAAATAGTTTCATCATCACCACTAAATCCTCTTTCTTCATCCTCTTCCTCACGATCCTTCTCTCCATCTCTAATCTTCTTTTATTTTCAATCATTATCTTCTTCTTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCACACATCGTGTTTCACTCC...

CDS

Download CDS FASTA

702 bp · TkA04G020560|TK1151|CDS

ATGGATCATATCGTTGGTGGGAAGTTTAAGATTGGGAGGAAAATCGGCAGTGGATCTTTCGGTGAACTTTTTTTAGGTGTTAATATTCAAAGTGGAGAAGAAGTCGCTATTAAACTGGAACCTGTCAAAACAAAACATCCTCAACTTCATTACGAATCAAAAATTTATACTCTTCTTCAAGGAGGAACGGGAATACCAAGTCTCAAATGGTTTGGAGTGGAAGGCGAGTACAATATCATGGTTATTGACCTTCTTGGACC...

Protein

Download Protein FASTA

233 aa · TkA04G020560|TK1151|PROTEIN

MDHIVGGKFKIGRKIGSGSFGELFLGVNIQSGEEVAIKLEPVKTKHPQLHYESKIYTLLQGGTGIPSLKWFGVEGEYNIMVIDLLGPSLEDLFNYCSRKFSLKTVLMLADQLINRVEFMHARGFLHRDIKPDNFLMGLGRKANMVYVIDFGLAKKYRDLQTHKHIPYRENKNLTGTARYASVNTHLGIEQSRRDDLESLGYVLMYFLRGSLPWQGLRAGNKKQKYDKISEKKC

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA04G020560`
TK1151 ID	TkA04G020560
OH-1004 ID	LXL04_036855
Relationship / confidence	Sequence Supported Annotation Or Model Conflict / Review
Protein identity (%)	100.000
Protein coverage (%)	TK1151 99.571 / OH-1004 51.101 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

Open Full ID Mapping

SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID TkA04G020560

Location Chr04:5225719-5229942 (+)

Description Similar to CKL11: Casein kinase 1-like protein 11

Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At3g23340`	Casein kinases are operationally defined by their preferential utilization of acidic proteins such as caseins as substrates.	No verified direct reference in this release
`At5g43320`	Casein kinases are operationally defined by their preferential utilization of acidic proteins such as caseins as substrates.	No verified direct reference in this release
`At1g03930`	Casein kinases are operationally defined by their preferential utilization of acidic proteins such as caseins as substrates.	No verified direct reference in this release
`At1g04440`	Casein kinases are operationally defined by their preferential utilization of acidic proteins such as caseins as substrates.	No verified direct reference in this release

Rice

Reference gene ID	Possible function	Papers / DOI
`Os02g0622100`	Casein kinases are operationally defined by their preferential utilization of acidic proteins such as caseins as substrates.	Roles of OsCKI1, a rice casein kinase I, in root development and plant hormone sensitivity.2003 · DOI: 10.1046/j.1365-313x.2003.01866.x Rice LTG1 is involved in adaptive growth and fitness under low ambient temperature.2014 · DOI: 10.1111/tpj.12487

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_036855 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0001558 regulation of cell growth Biological Process

GO:0006897 endocytosis Biological Process

GO:0007165 signal transduction Biological Process

GO:0016310 phosphorylation Biological Process

GO:0043622 cortical microtubule organization Biological Process

GO:0046777 protein autophosphorylation Biological Process

GO:0051510 regulation of unidimensional cell growth Biological Process

GO:0005634 nucleus Cellular Component

GO:0005737 cytoplasm Cellular Component

GO:0005739 mitochondrion Cellular Component

GO:0005856 cytoskeleton Cellular Component

GO:0009506 plasmodesma Cellular Component

KEGG gene cross-reference

ath:AT1G03930

ath:AT3G23340

ath:AT4G14340

ath:AT4G28540

ath:AT5G43320

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.512

Rank 1 · TkA04G020560 · TK1151

Nucleus0.466

Rank 2 · TkA04G020560 · TK1151

Mitochondrion0.161

Rank 3 · TkA04G020560 · TK1151

Cell membrane0.068

Rank 4 · TkA04G020560 · TK1151

Endoplasmic reticulum0.046

Rank 5 · TkA04G020560 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00069Pkinase9-224 aa

PF07714PK_Tyr_Ser-Thr10-219 aa

PF03109ABC115-40 aa

PF03109ABC186-158 aa

PF01636APH101-153 aa

PF17667Pkinase_fungal109-206 aa

PF06293Kdo110-154 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA04G020560	`PF00069`	Pkinase	9	224	3.1e-25	89.8
TkA04G020560	`PF07714`	PK_Tyr_Ser-Thr	10	219	2.3e-13	50.8
TkA04G020560	`PF03109`	ABC1	15	40	0.00016	21.6
TkA04G020560	`PF03109`	ABC1	86	158	0.00016	21.6
TkA04G020560	`PF01636`	APH	101	153	0.00011	22.8
TkA04G020560	`PF17667`	Pkinase_fungal	109	206	1.9e-09	37.4
TkA04G020560	`PF06293`	Kdo	110	154	0.0091	16.2

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q9LW62`	Arabidopsis thaliana	sp\|Q9LW62\|CKL10_ARATH Casein kinase 1-like protein 10	87.900%	Swiss-Prot	High
`Q9LSX4`	Arabidopsis thaliana	sp\|Q9LSX4\|CKL8_ARATH Casein kinase 1-like protein 8	87.900%	Swiss-Prot	High
`Q9ZWB3`	Arabidopsis thaliana	sp\|Q9ZWB3\|CKL9_ARATH Casein kinase 1-like protein 9	87.100%	Swiss-Prot	High
`Q5XF24`	Arabidopsis thaliana	sp\|Q5XF24\|CKL13_ARATH Casein kinase 1-like protein 13	87.100%	Swiss-Prot	High
`Q6K9N1`	Oryza sativa subsp. japonica	sp\|Q6K9N1\|CKI1_ORYSJ Casein kinase 1	90.100%	Swiss-Prot	High

JBrowse

View in Genome Browser

Gene Card