TkA04G018000 | RubberDandelionOmics

Gene overview

TkA04G018000

Reference: TK1151 Chr: Chr04 Coordinates: 4509097-4524587 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

7059 bp · TkA04G018000|TK1151|cDNA

GTTTAAATAATTGATAAATTTATTTACTTTTCTTATGTACACACGATAATGTTTACGATAGATACAACAACATGATATATATATACAATAAAGTAGTGGTAATATAACAGCAAACTTACATACATGGTGGAAATACACTAGAGTCGAATAGTGCACATGACTGCAGTTTTGAAATCCAAATGTTGTTGGAATGGCGGTTTAGTAATTAGGGTTCTCCATGTCTTGTTTCCAGGATGGTATATTTGTAAAAACAGAGATAA...

CDS

Download CDS FASTA

5115 bp · TkA04G018000|TK1151|CDS

ATGGGTGCTACGACAAATATTATCGTAGGTTCCCCTGTATGGGTTGAAGACCTATCAGTTGCTTGGATTGATGGAGAAGTGTTAGGAATAAATGGAGAGGAAGCTGAGATACAAACTACTGATGGAAAGAAAGTTGTTGCGAATTTATCAAAAATATATTCCAAAGATGTGGAAGCTCCTGCTGGTGGAGTTGATGACATGACAAAGCTTTCTTATTTGCATGAGCCAGGAGTTTTGCAAAATTTAGCTACCAGATATCA...

Protein

Download Protein FASTA

1704 aa · TkA04G018000|TK1151|PROTEIN

MGATTNIIVGSPVWVEDLSVAWIDGEVLGINGEEAEIQTTDGKKVVANLSKIYSKDVEAPAGGVDDMTKLSYLHEPGVLQNLATRYQLNEIYTYTGNILIAVNPFKRLPHLYDDKMMQRYKGAAFGDLDPHVFAIAESAFRAMVNEGKSNSILVSGESGAGKTETTKMLMQYLAFLGGRKGTEGKRTVEQQILESNPVLEAFGNAKTVRNNNSSRFGKFVEIQFDKQGRISGAAIRTYLLERSRVCQISDPERNYHCFYL...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA04G018000`
TK1151 ID	TkA04G018000
OH-1004 ID	LXL04_036901
Relationship / confidence	Rbh High Identity Coverage Synteny / Strict
Protein identity (%)	99.400
Protein coverage (%)	TK1151 99.941 / OH-1004 99.883 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

Open Full ID Mapping

SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID TkA04G018000

Location Chr04:4509097-4524587 (+)

Description Similar to XI-A: Myosin-7

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At1g08730`	Myosin heavy chain that is required for the cell cycle-regulated transport of various organelles and proteins for their segregation.	No verified direct reference in this release
`At1g54560`	Myosin heavy chain that is required for the cell cycle-regulated transport of various organelles and proteins for their segregation.	No verified direct reference in this release
`At5g20490`	Myosin heavy chain that is required for the cell cycle-regulated transport of various organelles and proteins for their segregation.	No verified direct reference in this release
`At1g17580`	Myosin heavy chain that is required for the cell cycle- regulated transport of various organelles and proteins for their segregation.	Enzymatic activity and motility of recombinant Arabidopsis myosin XI, MYA1.2007 · DOI: 10.1093/pcp/pcm054 A comparative study of the involvement of 17 Arabidopsis myosin family members on the motility of Golgi and other organelles.2009 · DOI: 10.1104/pp.109.136853 Myosin XIK is a major player in cytoplasm dynamics and is regulated by two amino acids in its tail.2012 · DOI: 10.1093/jxb/err265
`At1g04160`	Myosin heavy chain that is required for the cell cycle-regulated transport of various organelles and proteins for their segregation.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_036901 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0007015 actin filament organization Biological Process

GO:0009860 pollen tube growth Biological Process

GO:0030048 actin filament-based movement Biological Process

GO:0005634 nucleus Cellular Component

GO:0005737 cytoplasm Cellular Component

GO:0015629 actin cytoskeleton Cellular Component

GO:0016020 membrane Cellular Component

GO:0016459 myosin complex Cellular Component

GO:0000146 microfilament motor activity Molecular Function

GO:0003774 cytoskeletal motor activity Molecular Function

GO:0005516 calmodulin binding Molecular Function

GO:0005524 ATP binding Molecular Function

KEGG gene cross-reference

ath:AT1G04600

ath:AT1G08730

ath:AT1G54560

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.572

Rank 1 · TkA04G018000 · TK1151

Cell membrane0.261

Rank 2 · TkA04G018000 · TK1151

Nucleus0.170

Rank 3 · TkA04G018000 · TK1151

Golgi apparatus0.125

Rank 4 · TkA04G018000 · TK1151

Lysosome / Vacuole0.066

Rank 5 · TkA04G018000 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF02736Myosin_N5-53 aa

PF00063Myosin_head64-726 aa

PF13191AAA_16139-173 aa

PF13401AAA_22150-172 aa

PF07475Hpr_kinase_C152-170 aa

PF07728AAA_5152-173 aa

PF07728AAA_5317-377 aa

PF07475Hpr_kinase_C430-498 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA04G018000	`PF02736`	Myosin_N	5	53	1.2e-06	28.8
TkA04G018000	`PF00063`	Myosin_head	64	726	9.1e-257	854.4
TkA04G018000	`PF13191`	AAA_16	139	173	0.014	16.7
TkA04G018000	`PF13401`	AAA_22	150	172	0.049	14.7
TkA04G018000	`PF07475`	Hpr_kinase_C	152	170	1.3	9.2
TkA04G018000	`PF07728`	AAA_5	152	173	7.3	7.3
TkA04G018000	`PF07728`	AAA_5	317	377	7.3	7.3
TkA04G018000	`PF07475`	Hpr_kinase_C	430	498	1.3	9.2
TkA04G018000	`PF07728`	AAA_5	453	524	7.3	7.3
TkA04G018000	`PF00612`	IQ	747	761	4.1e-10	39.2
TkA04G018000	`PF00612`	IQ	766	782	4.1e-10	39.2
TkA04G018000	`PF00612`	IQ	791	809	4.1e-10	39.2
TkA04G018000	`PF00612`	IQ	815	833	4.1e-10	39.2
TkA04G018000	`PF00612`	IQ	839	857	4.1e-10	39.2
TkA04G018000	`PF00612`	IQ	862	881	4.1e-10	39.2
TkA04G018000	`PF28422`	CCDC89	888	1129	0.00038	20.6

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`F4HXP9`	Arabidopsis thaliana	sp\|F4HXP9\|MYO9_ARATH Myosin-9	62.100%	Swiss-Prot	High
`F4HWY6`	Arabidopsis thaliana	sp\|F4HWY6\|MYO11_ARATH Myosin-11	64.700%	Swiss-Prot	High
`F4K5J1`	Arabidopsis thaliana	sp\|F4K5J1\|MYO17_ARATH Myosin-17	60.500%	Swiss-Prot	High
`Q39160`	Arabidopsis thaliana	sp\|Q39160\|MYO5_ARATH Myosin-5	56.300%	Swiss-Prot	High
`F4I460`	Arabidopsis thaliana	sp\|F4I460\|MYO8_ARATH Myosin-8	54.000%	Swiss-Prot	High

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