TkA04G017570 | RubberDandelionOmics

Gene overview

TkA04G017570

Reference: TK1151 Chr: Chr04 Coordinates: 4376781-4378435 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1045 bp · TkA04G017570|TK1151|cDNA

ATTTATCTCACCAACATCCCAAATAAAAACAACGAGAGAGCGAGAGAAAAAAAAGTAGACTAGGAGAGATGACGTCGTTTGATGAGACGGAGTTACGGCTGGGATTACCGGGAGGCGGCGGCGCCGTTGTAGGAAATAAGGTCAGTGAAGGTGGAGATACACCGGTGCATAGCACCGGAAAGAGAAGTTACGACGACACAATCATGGATTTGAAGCTGAAACTTTCATCAGATGATCAGAAAACCAACAATGATCAAGAG...

CDS

Download CDS FASTA

711 bp · TkA04G017570|TK1151|CDS

ATGACGTCGTTTGATGAGACGGAGTTACGGCTGGGATTACCGGGAGGCGGCGGCGCCGTTGTAGGAAATAAGGTCAGTGAAGGTGGAGATACACCGGTGCATAGCACCGGAAAGAGAAGTTACGACGACACAATCATGGATTTGAAGCTGAAACTTTCATCAGATGATCAGAAAACCAACAATGATCAAGAGAATAATCTTTTCGCAACCGCCGGCGATGGCGATGGTGATTGCTCCGGTGACCCACCAGCGAAGGCACA...

Protein

Download Protein FASTA

236 aa · TkA04G017570|TK1151|PROTEIN

MTSFDETELRLGLPGGGGAVVGNKVSEGGDTPVHSTGKRSYDDTIMDLKLKLSSDDQKTNNDQENNLFATAGDGDGDCSGDPPAKAQVVGWPPVRSYRKNMLSVQKNICLRRHECGGAAFVKVSMDGAPYLRKVDLKLYKSYQDLSDALSNMFSSFTIGNCGSHGLKDFMNESKLMDLLNSSDYVPTYEDKDGDWMLVGDVPWEMFVDSCKRLRIMKGKEAIGLAPKAMEKCKNRS

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA04G017570`
TK1151 ID	TkA04G017570
OH-1004 ID	LXL04_036920
Relationship / confidence	Rbh Below Probable Coverage Or Synteny Threshold / Review
Protein identity (%)	99.200
Protein coverage (%)	TK1151 100.000 / OH-1004 65.374 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

Open Full ID Mapping

SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID TkA04G017570

Location Chr04:4376781-4378435 (+)

Description Similar to IAA16: Auxin-responsive protein IAA16

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At3g04730`	Aux/IAA proteins are short-lived transcriptional factors that function as repressors of early auxin response genes at low auxin concentrations.	No verified direct reference in this release
`At4g14550`	Aux/IAA proteins are short-lived transcriptional factors that function as repressors of early auxin response genes at low auxin concentrations.	No verified direct reference in this release
`At3g23050`	Aux/IAA proteins are short-lived transcriptional factors that function as repressors of early auxin response genes at low auxin concentrations.	No verified direct reference in this release
`At1g04250`	Aux/IAA proteins are short-lived transcriptional factors that function as repressors of early auxin response genes at low auxin concentrations.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_036920 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0006351 DNA-templated transcription Biological Process

GO:0006355 regulation of DNA-templated transcription Biological Process

GO:0009414 response to water deprivation Biological Process

GO:0009611 response to wounding Biological Process

GO:0009630 gravitropism Biological Process

GO:0009733 response to auxin Biological Process

GO:0009734 auxin-activated signaling pathway Biological Process

GO:0009753 response to jasmonic acid Biological Process

GO:0010102 lateral root morphogenesis Biological Process

GO:0045892 negative regulation of DNA-templated transcription Biological Process

GO:1900057 positive regulation of leaf senescence Biological Process

GO:0005634 nucleus Cellular Component

KEGG gene cross-reference

ath:AT1G04250

ath:AT3G04730

ath:AT3G23050

ath:AT4G14550

gmx:547965

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.880

Rank 1 · TkA04G017570 · TK1151

Cytoplasm0.175

Rank 2 · TkA04G017570 · TK1151

Cell membrane0.065

Rank 3 · TkA04G017570 · TK1151

Endoplasmic reticulum0.033

Rank 4 · TkA04G017570 · TK1151

Plastid0.016

Rank 5 · TkA04G017570 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF02309AUX_IAA6-227 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA04G017570	`PF02309`	AUX_IAA	6	227	8.7e-84	281.5

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`O24407`	Arabidopsis thaliana	sp\|O24407\|IAA16_ARATH Auxin-responsive protein IAA16	60.800%	Swiss-Prot	High
`Q38832`	Arabidopsis thaliana	sp\|Q38832\|IAA14_ARATH Auxin-responsive protein IAA14	60.700%	Swiss-Prot	High
`Q38825`	Arabidopsis thaliana	sp\|Q38825\|IAA7_ARATH Auxin-responsive protein IAA7	58.900%	Swiss-Prot	High
`P93830`	Arabidopsis thaliana	sp\|P93830\|IAA17_ARATH Auxin-responsive protein IAA17	59.600%	Swiss-Prot	High

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