TkA04G014190 | RubberDandelionOmics

Gene overview

TkA04G014190

Reference: TK1151 Chr: Chr04 Coordinates: 3545636-3547792 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1728 bp · TkA04G014190|TK1151|cDNA

CAGCAAGTCAAACATGGAAGTCAAAGGGAGAGTTGCTTAGTTCTGTCGTTGTTTATAGCTGTTGTGCCTTGTTTCCGCACCGTGAGTGTCGCTCGGAGCAATCGAGATCCAGATTACGGCGATTGCAACTCAATGCGAGAGGGAGATTCGGGGAGTGGAGACGGAAGAGAAGGTACGAAAGTGTAAGCAGGTTTGCGAAAGGGAACATGAGAGAAGAGGAGGGAAAAGGAAGGTGGACAATATGACATCGTTTTCGCGGA...

CDS

Download CDS FASTA

1362 bp · TkA04G014190|TK1151|CDS

ATGGTCGGAAAATGCCACCAGAGCTGCAAGGGTAGCCAAGGAGAACAGGAAAATCCGGAATGCTTCCAGAAATGCATGGAGAAATTCCAACCGGAGCAAGAGAAGCGTCGTGTCGGCGGCGGTAGCGGTCGTGATACTAGCCGGAAGAGCGGAAGGGGGTATGGGAAAGGACAGCAGTTAAACAACCCTTACGTTTTCGAAGATCGTCACTTCACCACAAAGCTAGAAAGTGAACAAGGGAGTGTTAGGTTTCTTCAAAA...

Protein

Download Protein FASTA

453 aa · TkA04G014190|TK1151|PROTEIN

MVGKCHQSCKGSQGEQENPECFQKCMEKFQPEQEKRRVGGGSGRDTSRKSGRGYGKGQQLNNPYVFEDRHFTTKLESEQGSVRFLQKFTDRSELFQGIGKYRVAILEAQPQTFIIPNHWDADALIYVVNGEGRISLVNTDSRENHNIKRGDIFRVPAGYSAYLINRHNNEKLVLAKILHSVSVPGELQTFVGVGGDNPESSFFNAFSNEVLQAAFDIDRDSLQKLFGQQKQKQGIFKKATEEQIRALSGKDESRSWPFGE...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA04G014190`
TK1151 ID	TkA04G014190
OH-1004 ID	LXL04_036954
Relationship / confidence	Multi Source To Oh1004 / Complex relationship
Protein identity (%)	99.300
Protein coverage (%)	TK1151 100.000 / OH-1004 78.103 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID	`TkA04G014190`
Location	Chr04:3545636-3547792 (+)
Description	Similar to AMP2-1: Vicilin-like antimicrobial peptides 2-1
Arabidopsis / Rice Reference Genes and Papers	Download references for this gene Arabidopsis No hit for this species in the current source table. Rice No hit for this species in the current source table.
Functional annotation source	View annotation sources Functional annotation source: OH1004 · `LXL04_036954` · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.
GO annotations (OH1004 source)	GO:0010431 seed maturation Biological Process GO:0031640 killing of cells of another organism Biological Process GO:0034214 protein hexamerization Biological Process GO:0042742 defense response to bacterium Biological Process GO:0050832 defense response to fungus Biological Process GO:0070207 protein homotrimerization Biological Process GO:0005576 extracellular region Cellular Component GO:0043245 extraorganismal space Cellular Component GO:0005507 copper ion binding Molecular Function GO:0019863 IgE binding Molecular Function GO:0045735 nutrient reservoir activity Molecular Function
KEGG gene cross-reference	jre:108986502 These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Lysosome / Vacuole0.362

Rank 1 · TkA04G014190 · TK1151

Extracellular0.358

Rank 2 · TkA04G014190 · TK1151

Endoplasmic reticulum0.251

Rank 3 · TkA04G014190 · TK1151

Cytoplasm0.148

Rank 4 · TkA04G014190 · TK1151

Cell membrane0.057

Rank 5 · TkA04G014190 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF02311AraC_binding106-158 aa

PF07883Cupin_2107-169 aa

PF00190Cupin_1111-219 aa

PF05899Cupin_3118-161 aa

PF12852Cupin_6124-225 aa

PF14667Polysacc_synt_C124-165 aa

PF11699CENP-C_C125-171 aa

PF00190Cupin_1265-430 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA04G014190	`PF02311`	AraC_binding	106	158	0.082	13.4
TkA04G014190	`PF07883`	Cupin_2	107	169	9.7e-09	35.5
TkA04G014190	`PF00190`	Cupin_1	111	219	1.5e-36	125.9
TkA04G014190	`PF05899`	Cupin_3	118	161	0.0086	16.5
TkA04G014190	`PF12852`	Cupin_6	124	225	0.01	16.3
TkA04G014190	`PF14667`	Polysacc_synt_C	124	165	0.073	13.9
TkA04G014190	`PF11699`	CENP-C_C	125	171	0.1	13.6
TkA04G014190	`PF00190`	Cupin_1	265	430	1.5e-36	125.9
TkA04G014190	`PF14667`	Polysacc_synt_C	299	333	0.073	13.9
TkA04G014190	`PF07883`	Cupin_2	301	332	9.7e-09	35.5
TkA04G014190	`PF05899`	Cupin_3	360	375	0.0086	16.5
TkA04G014190	`PF12852`	Cupin_6	360	383	0.01	16.3
TkA04G014190	`PF07883`	Cupin_2	361	390	9.7e-09	35.5
TkA04G014190	`PF02311`	AraC_binding	361	394	0.082	13.4
TkA04G014190	`PF11699`	CENP-C_C	363	381	0.1	13.6
TkA04G014190	`PF14667`	Polysacc_synt_C	366	389	0.073	13.9

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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