TkA04G012430 | RubberDandelionOmics

Gene overview

TkA04G012430

Reference: TK1151 Chr: Chr04 Coordinates: 3104524-3105710 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1137 bp · TkA04G012430|TK1151|cDNA

ATGATAAGGATTGTGGATGGGGAAAATATCTCTCGTACACTATCTAGATTTGGTCCGGCCAATCAGAAATACACGTTCCTTGTTACTAATAACAGAGCAGGTACTGTTGGGTATTGTGATCCACTGTATTTAGAGTCTGGGATACTAACAAAGGAGTCGGACGTATATTCATTTGGTGTGGTGTTGTTTGAAGTTTTATGTGGGAGATTGTGTTTTGAGAGCAACGATAAGCCTCAAACTTTTACGCAATTGGTGAGAAA...

CDS

Download CDS FASTA

1137 bp · TkA04G012430|TK1151|CDS

ATGATAAGGATTGTGGATGGGGAAAATATCTCTCGTACACTATCTAGATTTGGTCCGGCCAATCAGAAATACACGTTCCTTGTTACTAATAACAGAGCAGGTACTGTTGGGTATTGTGATCCACTGTATTTAGAGTCTGGGATACTAACAAAGGAGTCGGACGTATATTCATTTGGTGTGGTGTTGTTTGAAGTTTTATGTGGGAGATTGTGTTTTGAGAGCAACGATAAGCCTCAAACTTTTACGCAATTGGTGAGAAA...

Protein

Download Protein FASTA

378 aa · TkA04G012430|TK1151|PROTEIN

MIRIVDGENISRTLSRFGPANQKYTFLVTNNRAGTVGYCDPLYLESGILTKESDVYSFGVVLFEVLCGRLCFESNDKPQTFTQLVRKHYKQKNLNEIIWGNIKDEIHPSSLKVFSTIAYQCLKNDNEKRPSMNLIVSELESALEYQVDEYKSLQIRGVDDKNLIQNLHNDPREDIKRHICVGLVKRVPLFKNMNERLLDDICQRLKPRLYTKNSYIIKEGDPVNEMLFIIHGDLCGDELLIWALDPESGANLPPSIRTLK...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA04G012430`
TK1151 ID	TkA04G012430
OH-1004 ID	LXL04_036976
Relationship / confidence	Rbh Sequence Supported / Probable
Protein identity (%)	94.700
Protein coverage (%)	TK1151 100.000 / OH-1004 100.000 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

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Basic Information and Functional Annotation

Gene ID TkA04G012430

Location Chr04:3104524-3105710 (+)

Description Similar to CNGC8: Putative cyclic nucleotide-gated ion channel 8

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At2g23980`	Probable cyclic nucleotide-gated ion channel.	No verified direct reference in this release
`At5g57940`	Probable cyclic nucleotide-gated ion channel.	No verified direct reference in this release
`At4g30560`	Putative cyclic nucleotide-gated ion channel.	No verified direct reference in this release
`At1g19780`	Putative cyclic nucleotide-gated ion channel.	No verified direct reference in this release
`At1g15990`	Putative cyclic nucleotide-gated ion channel.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_036976 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0009408 response to heat Biological Process

GO:0009860 pollen tube growth Biological Process

GO:0005634 nucleus Cellular Component

GO:0005739 mitochondrion Cellular Component

GO:0005886 plasma membrane Cellular Component

GO:0035618 root hair Cellular Component

GO:0071944 cell periphery Cellular Component

GO:0090406 pollen tube Cellular Component

GO:0005216 monoatomic ion channel activity Molecular Function

GO:0005223 intracellularly cGMP-activated cation channel activity Molecular Function

GO:0005249 voltage-gated potassium channel activity Molecular Function

GO:0005262 calcium channel activity Molecular Function

KEGG gene cross-reference

ath:AT1G15990

ath:AT1G19780

ath:AT2G23980

ath:AT4G30560

ath:AT5G57940

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cell membrane0.528

Rank 1 · TkA04G012430 · TK1151

Cytoplasm0.243

Rank 2 · TkA04G012430 · TK1151

Nucleus0.180

Rank 3 · TkA04G012430 · TK1151

Endoplasmic reticulum0.095

Rank 4 · TkA04G012430 · TK1151

Lysosome / Vacuole0.056

Rank 5 · TkA04G012430 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00069Pkinase17-136 aa

PF07714PK_Tyr_Ser-Thr27-139 aa

PF00027cNMP_binding208-234 aa

PF00027cNMP_binding255-276 aa

PF24609IQ_SCN5A_C306-322 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA04G012430	`PF00069`	Pkinase	17	136	2.8e-11	44.1
TkA04G012430	`PF07714`	PK_Tyr_Ser-Thr	27	139	3.5e-08	33.8
TkA04G012430	`PF00027`	cNMP_binding	208	234	0.00032	21.3
TkA04G012430	`PF00027`	cNMP_binding	255	276	0.00032	21.3
TkA04G012430	`PF24609`	IQ_SCN5A_C	306	322	0.27	11.5

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`O82226`	Arabidopsis thaliana	sp\|O82226\|CNGC6_ARATH Probable cyclic nucleotide-gated ion channel 6	55.700%	Swiss-Prot	Medium
`Q8RWS9`	Arabidopsis thaliana	sp\|Q8RWS9\|CNGC5_ARATH Probable cyclic nucleotide-gated ion channel 5	50.400%	Swiss-Prot	Medium
`Q9M0A4`	Arabidopsis thaliana	sp\|Q9M0A4\|CNGC9_ARATH Putative cyclic nucleotide-gated ion channel 9	47.900%	Swiss-Prot	Medium
`Q9FXH6`	Arabidopsis thaliana	sp\|Q9FXH6\|CNGC8_ARATH Putative cyclic nucleotide-gated ion channel 8	57.600%	Swiss-Prot	Low
`Q9S9N5`	Arabidopsis thaliana	sp\|Q9S9N5\|CNGC7_ARATH Putative cyclic nucleotide-gated ion channel 7	55.100%	Swiss-Prot	Low

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