Gene Card
Gene overview
cDNA / CDS / Protein Sequences
674 bp · TkA04G012170|TK1151|cDNA
GGGTGACTCACTTCTCGTGCCAAAGCCCTAAAACCTCAAAACCCTCTTTCTCATCGCGTTCTCAGGCGAACTGTTAATTCTCAGTTTCTCACTCCTGAAGCTCTTCGGAAATCTCTCCAGCAATGAAGCTCGTCCGGTTTTTGATGAAGCTGAACAACGAGACAGTTTCAATCGAGCTGAAGAACGGAACGGTTGTTCACGGAACAATCACAGGTGTGGATATTAGCATGAACACACACTTGAAGACGGTTAAACTTACT...
345 bp · TkA04G012170|TK1151|CDS
ATGAAGCTCGTCCGGTTTTTGATGAAGCTGAACAACGAGACAGTTTCAATCGAGCTGAAGAACGGAACGGTTGTTCACGGAACAATCACAGGTGTGGATATTAGCATGAACACACACTTGAAGACGGTTAAACTTACTCTCAAGGGGAAGAATCCAGTGAGCTTAGATCACCTGAGTGTGCGGGGTAACAACATCCGATACTACATCTTACCCGACAGCTTAAATCTCGAGACTCTTTTGGTTGAAGAAACACCTAGGGT...
Protein
Download Protein FASTA114 aa · TkA04G012170|TK1151|PROTEIN
MKLVRFLMKLNNETVSIELKNGTVVHGTITGVDISMNTHLKTVKLTLKGKNPVSLDHLSVRGNNIRYYILPDSLNLETLLVEETPRVKPKKPTAGRPVGRGRGRGRGRGRGRGR
Flanking Sequence Download
Sequence orientation and download details
Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.
ID Mapping
| Input ID | TkA04G012170 |
|---|---|
| TK1151 ID | TkA04G012170 |
| OH-1004 ID | LXL04_036989 |
| Relationship / confidence | Rbh Below Probable Coverage Or Synteny Threshold / Review |
| Protein identity (%) | 100.000 |
| Protein coverage (%) | TK1151 87.719 / OH-1004 87.719Coverage and evidenceCoverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation. |
| Source version | TK1151 / GWHBCHF00000000 |
SNP / Indel variants and carrier samplesCRA009020 · TK1151
Expand to load variant records for this gene.
Basic Information and Functional Annotation
| Gene ID | TkA04G012170 | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| Location | Chr04:3006825-3009218 (+) | |||||||||
| Description | Similar to SMD1B: Small nuclear ribonucleoprotein SmD1b | |||||||||
| Arabidopsis / Rice Reference Genes and Papers |
Download references for this gene Arabidopsis
RiceNo hit for this species in the current source table. | |||||||||
| Functional annotation source | View annotation sourcesFunctional annotation source: OH1004 · | |||||||||
| GO annotations (OH1004 source) | GO:0000387 spliceosomal snRNP assembly Biological Process GO:0000395 mRNA 5'-splice site recognition Biological Process GO:0000398 mRNA splicing, via spliceosome Biological Process GO:0008380 RNA splicing Biological Process GO:0035194 regulatory ncRNA-mediated post-transcriptional gene silencing Biological Process GO:0043484 regulation of RNA splicing Biological Process GO:0045292 mRNA cis splicing, via spliceosome Biological Process GO:0000243 commitment complex Cellular Component GO:0000325 plant-type vacuole Cellular Component GO:0005634 nucleus Cellular Component GO:0005681 spliceosomal complex Cellular Component GO:0005682 U5 snRNP Cellular Component | |||||||||
| KEGG gene cross-reference | ath:AT3G07590 ath:AT4G02840 dme:Dmel_CG10753 mmu:20641 spo:2542690 These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene. |
Gene expression
View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.
Data sources and gene correspondence
Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.
Subcellular Localization Top 5
Computational predictions or homology annotations below do not replace localization experiments.
LocPro · Direct prediction · Computational prediction, not experimental localization
Predicted Functional Domains
Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.
PF11095Gemin72-37 aaPF01423LSM5-69 aaPF10842DUF26425-32 aaPF22166WHD_ArnR19-52 aaPF10842DUF264242-69 aaPF25698EBNA2_Core86-114 aa| Gene ID | Domain ID | Domain Name | Start aa | End aa | E-value | Score |
|---|---|---|---|---|---|---|
| TkA04G012170 | PF11095 | Gemin7 | 2 | 37 | 0.055 | 14.1 |
| TkA04G012170 | PF01423 | LSM | 5 | 69 | 2.1e-18 | 66.5 |
| TkA04G012170 | PF10842 | DUF2642 | 5 | 32 | 0.073 | 13.7 |
| TkA04G012170 | PF22166 | WHD_ArnR1 | 9 | 52 | 0.0013 | 19.5 |
| TkA04G012170 | PF10842 | DUF2642 | 42 | 69 | 0.073 | 13.7 |
| TkA04G012170 | PF25698 | EBNA2_Core | 86 | 114 | 0.16 | 11.7 |
Arabidopsis / Rice Protein Homology
Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.