TkA04G011370 | RubberDandelionOmics

Gene overview

TkA04G011370

Reference: TK1151 Chr: Chr04 Coordinates: 2771144-2772201 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

945 bp · TkA04G011370|TK1151|cDNA

CTGAGAACGGCGGCAAGCGGTGGCTCCGGTTCACAGGAATCGGATTTTTTTAACGAGAGAGTGCTTCTGTTAGTCATGGAATCGATGAATTGGGATGTTCAGGTCCTTTGCCGGACAGCGGCGTGTTGCCGTCTACTCCGCGCCATGGCGAAGCGGTTGTTATGGCGGAAGCTCTGTTTGTTCCGTGCGCCGAGGATAACAGAGACTTTATCGAACGGCGTTCACAGCAGCCGGATGGGCGGCGGTTGGCCGGCGTTAGC...

CDS

Download CDS FASTA

768 bp · TkA04G011370|TK1151|CDS

ATGGAATCGATGAATTGGGATGTTCAGGTCCTTTGCCGGACAGCGGCGTGTTGCCGTCTACTCCGCGCCATGGCGAAGCGGTTGTTATGGCGGAAGCTCTGTTTGTTCCGTGCGCCGAGGATAACAGAGACTTTATCGAACGGCGTTCACAGCAGCCGGATGGGCGGCGGTTGGCCGGCGTTAGCTAAGCTTTTGTTTTTTTGCGGTGGTTGCGAGTCTACTCGGAATTTCGTATTGAGCCGGCCGAAACCCGGGCACTT...

Protein

Download Protein FASTA

255 aa · TkA04G011370|TK1151|PROTEIN

MESMNWDVQVLCRTAACCRLLRAMAKRLLWRKLCLFRAPRITETLSNGVHSSRMGGGWPALAKLLFFCGGCESTRNFVLSRPKPGHFVTESRFSKTSGKSFLMKRCRGDLLFVSDPCEHRLGDREDDLGVFRGVFRGFRESRTRACLIARQAALEERERCPYCGARVWSMMTAGLVPKNAAKRLGSHDGALEYFVCVNGHLHGTCWLAPLSSDEGVNGDDEEYAMDGSDGTGNSSGGVTTDGYDDDLTFNTNGFR

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA04G011370`
TK1151 ID	TkA04G011370
OH-1004 ID	LXL04_036998
Relationship / confidence	Rbh High Identity Coverage Synteny / Strict
Protein identity (%)	100.000
Protein coverage (%)	TK1151 100.000 / OH-1004 88.542 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

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Basic Information and Functional Annotation

Gene ID TkA04G011370

Location Chr04:2771144-2772201 (-)

Description Similar to EDL3: EID1-like F-box protein 3

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At3g63060`	EID1-like F-box protein 3.	No verified direct reference in this release
`At5g39360`	EID1-like F-box protein 2.	No verified direct reference in this release
`At5g15440`	EID1-like F-box protein 1.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_036998 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0006970 response to osmotic stress Biological Process

GO:0009414 response to water deprivation Biological Process

GO:0009651 response to salt stress Biological Process

GO:0009737 response to abscisic acid Biological Process

GO:0009738 abscisic acid-activated signaling pathway Biological Process

GO:0010029 regulation of seed germination Biological Process

GO:0010228 vegetative to reproductive phase transition of meristem Biological Process

GO:0005634 nucleus Cellular Component

GO:0005739 mitochondrion Cellular Component

KEGG gene cross-reference

ath:AT3G63060

ath:AT5G15440

ath:AT5G39360

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.710

Rank 1 · TkA04G011370 · TK1151

Cytoplasm0.277

Rank 2 · TkA04G011370 · TK1151

Mitochondrion0.052

Rank 3 · TkA04G011370 · TK1151

Cell membrane0.049

Rank 4 · TkA04G011370 · TK1151

Endoplasmic reticulum0.033

Rank 5 · TkA04G011370 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF12937F-box-like9-35 aa

PF13408Zn_ribbon_recom65-74 aa

PF27778EID2_C82-206 aa

PF13408Zn_ribbon_recom159-205 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA04G011370	`PF12937`	F-box-like	9	35	0.4	11.2
TkA04G011370	`PF13408`	Zn_ribbon_recom	65	74	0.081	14.0
TkA04G011370	`PF27778`	EID2_C	82	206	1.3e-55	187.5
TkA04G011370	`PF13408`	Zn_ribbon_recom	159	205	0.081	14.0

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q93ZT5`	Arabidopsis thaliana	sp\|Q93ZT5\|EDL3_ARATH EID1-like F-box protein 3	62.900%	Swiss-Prot	High
`Q9FLZ8`	Arabidopsis thaliana	sp\|Q9FLZ8\|EDL2_ARATH EID1-like F-box protein 2	43.400%	Swiss-Prot	Medium
`Q9LF38`	Arabidopsis thaliana	sp\|Q9LF38\|EDL1_ARATH EID1-like F-box protein 1	43.500%	Swiss-Prot	Medium

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