TkA04G010380 | RubberDandelionOmics

Gene overview

TkA04G010380

Reference: TK1151 Chr: Chr04 Coordinates: 2470803-2474044 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1064 bp · TkA04G010380|TK1151|cDNA

TATATAGGCGGAAGGAATCTTCCGGATAAACCCGGAGAACAGTCAAGAGGAGCGGGTGCGGGACCAACTAAACCGAGGCACGGTTCCCGAGAACATCGAGGTTCACTGTCTCGCGGGTTTAATCAAAGCATGGTTCCGGGAGCTTCCATGTGGAGTCCTTGATGGCCTTTCACCCGATGAGGTTCTTCAGTGTAACACTGAAGAAGCCCGTGTTGGGCTTGTCAAACAGCTCAAGCCCACCGAAACCGCTTTGCTTAATT...

CDS

Download CDS FASTA

1248 bp · TkA04G010380|TK1151|CDS

ATGACAGAAATGGTGGTTGTACCAAGAGGAGCAGGCTGCGCCGCCGTATTTGGCGGCAGCTGCGGCGGAAATGAAACCACAAAAGAGGGTTCTTCAAAAGAACACCAAAACCAACTCTCCATAGTTGCTTTCATCATAGCAGCTCTAAGAAAATCAATGGCAGCTTGCCGAGTTGATGATCAGAGAGAAGAATCAAAATCAACAAAACCAGCAACTCTTCGTAAAATGGAAATCGGTTGGCCAACGGATGTTCAACATTT...

Protein

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415 aa · TkA04G010380|TK1151|PROTEIN

MTEMVVVPRGAGCAAVFGGSCGGNETTKEGSSKEHQNQLSIVAFIIAALRKSMAACRVDDQREESKSTKPATLRKMEIGWPTDVQHLTHVTFDRFHGFLGLPVEFEVEIPCRVPSASVSVFGVSAESMQCSYDSKGNSVPTILLLMQERLYAQGGLKAEGIFRINPENSQEERVRDQLNRGTVPENIEVHCLAGLIKAWFRELPCGVLDGLSPDEVLQCNTEEARVGLVKQLKPTETALLNWAIDLMSDVAQQEESNKMN...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA04G010380`
TK1151 ID	TkA04G010380
OH-1004 ID	LXL04_037021
Relationship / confidence	Multi Source To Oh1004 / Complex relationship
Protein identity (%)	100.000
Protein coverage (%)	TK1151 100.000 / OH-1004 100.000 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

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Basic Information and Functional Annotation

Gene ID TkA04G010380

Location Chr04:2470803-2474044 (-)

Description Similar to ROPGAP2: Rho GTPase-activating protein 2

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At4g03100`	Acts as a GTPase activator for the Rac-type GTPase by converting it to an inactive GDP-bound state.	No verified direct reference in this release
`At5g22400`	Acts as a GTPase activator for the Rac-type GTPase by converting it to an inactive GDP-bound state.	No verified direct reference in this release
`At2g46710`	Acts as a GTPase activator for the Rac-type GTPase by converting it to an inactive GDP-bound state.	No verified direct reference in this release
`At3g11490`	Acts as a GTPase activator for the Rac-type GTPase by converting it to an inactive GDP-bound state.	RopGAP4-dependent Rop GTPase rheostat control of Arabidopsis oxygen deprivation tolerance.2002 · DOI: 10.1126/science.1071505
`At1g08340`	Acts as a GTPase activator for the Rac-type GTPase by converting it to an inactive GDP-bound state.	No verified direct reference in this release

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_037021 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0007165 signal transduction Biological Process

GO:0009664 plant-type cell wall organization Biological Process

GO:0034059 response to anoxia Biological Process

GO:0005737 cytoplasm Cellular Component

GO:0005886 plasma membrane Cellular Component

GO:0009507 chloroplast Cellular Component

GO:0009531 secondary cell wall Cellular Component

GO:0005096 GTPase activator activity Molecular Function

KEGG gene cross-reference

ath:AT1G08340

ath:AT2G46710

ath:AT3G11490

ath:AT4G03100

ath:AT5G22400

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

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Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.513

Rank 1 · TkA04G010380 · TK1151

Nucleus0.307

Rank 2 · TkA04G010380 · TK1151

Cell membrane0.191

Rank 3 · TkA04G010380 · TK1151

Mitochondrion0.115

Rank 4 · TkA04G010380 · TK1151

Golgi apparatus0.096

Rank 5 · TkA04G010380 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00786PBD77-105 aa

PF00620RhoGAP140-274 aa

PF00707IF3_C238-271 aa

PF23177bHLH_IRO3257-305 aa

PF23177bHLH_IRO3350-383 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA04G010380	`PF00786`	PBD	77	105	0.00011	23.1
TkA04G010380	`PF00620`	RhoGAP	140	274	2.1e-21	77.1
TkA04G010380	`PF00707`	IF3_C	238	271	0.21	12.3
TkA04G010380	`PF23177`	bHLH_IRO3	257	305	7.8	7.7
TkA04G010380	`PF23177`	bHLH_IRO3	350	383	7.8	7.7

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`F4JI46`	Arabidopsis thaliana	sp\|F4JI46\|RGAP2_ARATH Rho GTPase-activating protein 2	74.900%	Swiss-Prot	Medium
`Q9FMR1`	Arabidopsis thaliana	sp\|Q9FMR1\|RGAP1_ARATH Rho GTPase-activating protein 1	65.900%	Swiss-Prot	Medium
`Q8GYY5`	Arabidopsis thaliana	sp\|Q8GYY5\|RGAP3_ARATH Rho GTPase-activating protein 3	64.800%	Swiss-Prot	Medium
`Q9CAX8`	Arabidopsis thaliana	sp\|Q9CAX8\|RGAP4_ARATH Rho GTPase-activating protein 4	61.800%	Swiss-Prot	Medium
`Q6NKT5`	Arabidopsis thaliana	sp\|Q6NKT5\|RGAP5_ARATH Rho GTPase-activating protein 5	63.900%	Swiss-Prot	Medium

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