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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA04G004950
Reference: TK1151 Chr: Chr04 Coordinates: 1179874-1185675 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

1624 bp · TkA04G004950|TK1151|cDNA

CCGAAGTCCGTTCTGTCTGTAAAGACCCTTACAGGTAATTTGAATGTGTCATTTTACATTCCATCTGCATCTTGTTGATTCTGGAGTCTTGTACATGCAGCATACATAAATCTGTACTCAAATCCAAAGGTTCAATAAATGAAGTTAATCAAATTGCACAGCTAAGGATTATTATTAAACCCAAGCCTTGTGTTGGCGTAGGGCCTTTATGTAATGCACAACAGATCTGCTACCATGTGCTTGGGCTGGTACATGGGATC...

CDS

Download CDS FASTA

2634 bp · TkA04G004950|TK1151|CDS

ATGGCTTCTGCTCTAAAAATTTCAGTGTCTGTAGAATGTGTGAATATATGTAATTATCCGAAAGGGGATTGGAATGGAAGATATGATTGTAGTCCAATTCCGTGTGCGTGGAAGGCTCCAAGGGCCTTGACCGGCTTCCTAGCTAGCACTGCTAATTCGTCGGCTTTGCATGTACAGAGTGGAAGAAAAAGTCATCGTGGCCATAGATGTGAAGCTGCTGGTATTAGAGCCAGGTTATCCTTTGAAGCTTTAGATGGGTT...

Protein

Download Protein FASTA

877 aa · TkA04G004950|TK1151|PROTEIN

MASALKISVSVECVNICNYPKGDWNGRYDCSPIPCAWKAPRALTGFLASTANSSALHVQSGRKSHRGHRCEAAGIRARLSFEALDGLLPQGLKRSSLLHLDCRKWALSCSSSFASGYDEVSPERLWKDLKPAIAYLTSDELKLVHDALKLAFEAHDGQKRRSGEPFIIHPVEVAKILGELELDWESIAAGLLHDTVEDTNLVTFERIEKEFGATVRHIVEGETKVSKLGKLKYKNESHSVQDVKAHDLRQMFLAMTEEVR...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

Download Gene (CDS) Download Protein

ID Mapping

Input IDTkA04G004950
TK1151 IDTkA04G004950
OH-1004 IDLXL04_037088
Relationship / confidenceRbh High Identity Coverage Synteny / Strict
Protein identity (%)99.100
Protein coverage (%)TK1151 100.000 / OH-1004 100.000
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA04G004950
LocationChr04:1179874-1185675 (-)
DescriptionSimilar to RSH1: Putative GTP diphosphokinase RSH1, chloroplastic
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

Reference gene IDPossible functionPapers / DOI
UniProt: P0DKG8 May be involved in a rapid plant ppGpp (guanosine 3'-diphosphate 5'-diphosphate)-mediated response to pathogens and other stresses. No verified direct reference in this release
At4g02260 May be involved in a rapid plant ppGpp (guanosine 3'-diphosphate 5'-diphosphate)-mediated response to pathogens and other stresses (By similarity).
Expression profiling of four RelA/SpoT-like proteins, homologues of bacterial stringent factors, in Arabidopsis thaliana.2008 · DOI: 10.1007/s00425-008-0758-5

Rice

Reference gene IDPossible functionPapers / DOI
Os03g0340900 May be involved in a rapid plant ppGpp (guanosine 3'-diphosphate 5'-diphosphate)-mediated response to pathogens and other stresses. No verified direct reference in this release
Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_037088 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0009611 response to wounding Biological Process
GO:0010150 leaf senescence Biological Process
GO:0015949 nucleobase-containing small molecule interconversion Biological Process
GO:0015969 guanosine tetraphosphate metabolic process Biological Process
GO:0015970 guanosine tetraphosphate biosynthetic process Biological Process
GO:0015979 photosynthesis Biological Process
GO:0042594 response to starvation Biological Process
GO:0005886 plasma membrane Cellular Component
GO:0009507 chloroplast Cellular Component
GO:0005524 ATP binding Molecular Function
GO:0005525 GTP binding Molecular Function
GO:0008728 GTP diphosphokinase activity Molecular Function
KEGG gene cross-reference
ath:AT4G02260
bsu:BSU27600
dosa:Os03g0340900
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Plastid0.923
Rank 1 · TkA04G004950 · TK1151
Mitochondrion0.085
Rank 2 · TkA04G004950 · TK1151
Cytoplasm0.042
Rank 3 · TkA04G004950 · TK1151
Nucleus0.040
Rank 4 · TkA04G004950 · TK1151
Peroxisome0.023
Rank 5 · TkA04G004950 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF13328HD_4147-304 aa
PF01966HD167-273 aa
PF22629ACT_AHAS_ss237-262 aa
PF23289Spectrin_5241-278 aa
PF01756ACOX262-337 aa
PF13879Hmw_CFAP97320-355 aa
PF04607RelA_SpoT373-489 aa
PF02824TGS560-619 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA04G004950PF13328HD_41473048.3e-44149.8
TkA04G004950PF01966HD1672731.2e-1352.1
TkA04G004950PF22629ACT_AHAS_ss2372620.02115.7
TkA04G004950PF23289Spectrin_52412780.2212.3
TkA04G004950PF01756ACOX2623373.67.9
TkA04G004950PF13879Hmw_CFAP973203554.58.8
TkA04G004950PF04607RelA_SpoT3734891.7e-2383.7
TkA04G004950PF02824TGS5606197.7e-2174.6
TkA04G004950PF01756ACOX6266863.67.9
TkA04G004950PF23289Spectrin_56386710.2212.3
TkA04G004950PF24931ACT_ACR9_3rd7908480.03914.7
TkA04G004950PF13291ACT_47928366.6e-0524.2
TkA04G004950PF01842ACT7928360.007116.8
TkA04G004950PF22629ACT_AHAS_ss7968510.02115.7

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

ProteinOrganismDescriptionIdentityDatabaseConfidence
P0DKG8Arabidopsis thalianasp|P0DKG8|RSH1L_ARATH Putative GTP diphosphokinase RSH1, chloroplastic65.400%Swiss-ProtHigh
F4JHA2Arabidopsis thalianasp|F4JHA2|RSH1C_ARATH Putative GTP diphosphokinase RSH1, chloroplastic65.400%Swiss-ProtHigh
Q9AYT5Oryza sativa subsp. japonicasp|Q9AYT5|RSH1_ORYSJ Putative GTP diphosphokinase RSH1, chloroplastic63.200%Swiss-ProtHigh

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