TkA04G001290 | RubberDandelionOmics

Gene overview

TkA04G001290

Reference: TK1151 Chr: Chr04 Coordinates: 343912-346341 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1398 bp · TkA04G001290|TK1151|cDNA

CGGGCTTGCAAGTTGGAGTTCAAAAAAGCCCGGCCGCGGATATTATCTCATCCGATCATCTCTTGATCTCTTCCCCAAACCACGCATAAAAGGTTTTCTCTCGATTTCATCGATCCAAACTGCTCCATTGATTTTCTTTTTCTTCGCTAAACCCTCATATTTTCCTTTGTGCATCGAGCGATCTCTATTCTACTGGCGTTCGTTTCTGTTGGCCATGCGAATTTGCTTCTCCGGGACCAGGATCGCCCTCTCCAGAGAGG...

CDS

Download CDS FASTA

933 bp · TkA04G001290|TK1151|CDS

ATGACAGCTGATAATCAGCCCCCTACTCCCTCTTCCATGCTATGCAATGCCGGCGCCGGCGCTGTGGCGGGAGTTCTTGCAGCCACATTTGTATGTCCATTAGATGTGATCAAGACCAGGTTTCAGGTTCATGGTCTACCGCAGCTTAACGGTGGAAAAATCGGAGGCAGTCTTATAATCGGGAGTCTGCAGCAGATTGTGAGGAAAGATGGGTTCCGTGGCATGTACCGTGGGCTTTCTCCAACTATTCTTGCCTTGCT...

Protein

Download Protein FASTA

310 aa · TkA04G001290|TK1151|PROTEIN

MTADNQPPTPSSMLCNAGAGAVAGVLAATFVCPLDVIKTRFQVHGLPQLNGGKIGGSLIIGSLQQIVRKDGFRGMYRGLSPTILALLPNWAVYFTVYDWLKCSISSDDGSHQLSFGGNMIAASGAGVATTVVTNPLWVVKTRLQTQGMGRRVVMPYRGTLSALLRISQEEGIRGLYSGLVPALAGISHVAIQFPAYEKMKAYLASRENIEMDKLGARDVAVASSVSKVFASTLTYPHEVVRARLQEQGHHSEKRYTGMVD...

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA04G001290`
TK1151 ID	TkA04G001290
OH-1004 ID	LXL04_037128
Relationship / confidence	Multi Source To Oh1004 / Complex relationship
Protein identity (%)	99.400
Protein coverage (%)	TK1151 100.000 / OH-1004 100.000 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

Open Full ID Mapping

SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID TkA04G001290

Location Chr04:343912-346341 (-)

Description Similar to NDT1: Nicotinamide adenine dinucleotide transporter 1, chloroplastic

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At2g47490`	May mediate NAD⁺ import into chloroplasts.	Molecular identification and functional characterization of Arabidopsis thaliana mitochondrial and chloroplastic NAD+ carrier proteins.2009 · DOI: 10.1074/jbc.m109.041830
`At1g25380`	May mediate NAD⁺ import into chloroplasts.	Molecular identification and functional characterization of Arabidopsis thaliana mitochondrial and chloroplastic NAD+ carrier proteins.2009 · DOI: 10.1074/jbc.m109.041830

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_037128 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0006850 pyruvate import into mitochondria Biological Process

GO:0035352 NAD transmembrane transport Biological Process

GO:0043132 NAD transport Biological Process

GO:1990549 mitochondrial NAD transmembrane transport Biological Process

GO:0005739 mitochondrion Cellular Component

GO:0005743 mitochondrial inner membrane Cellular Component

GO:0031966 mitochondrial membrane Cellular Component

GO:0031969 chloroplast membrane Cellular Component

GO:0015297 antiporter activity Molecular Function

GO:0051724 NAD transmembrane transporter activity Molecular Function

KEGG gene cross-reference

ath:AT1G25380

ath:AT2G47490

ddi:DDB_G0290669

sce:YIL006W

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Mitochondrion0.917

Rank 1 · TkA04G001290 · TK1151

Cytoplasm0.038

Rank 2 · TkA04G001290 · TK1151

Nucleus0.029

Rank 3 · TkA04G001290 · TK1151

Cell membrane0.023

Rank 4 · TkA04G001290 · TK1151

Peroxisome0.017

Rank 5 · TkA04G001290 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00153Mito_carr11-103 aa

PF00153Mito_carr112-205 aa

PF13995YebF210-264 aa

PF00153Mito_carr220-305 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA04G001290	`PF00153`	Mito_carr	11	103	4.6e-76	251.4
TkA04G001290	`PF00153`	Mito_carr	112	205	4.6e-76	251.4
TkA04G001290	`PF13995`	YebF	210	264	0.22	12.3
TkA04G001290	`PF00153`	Mito_carr	220	305	4.6e-76	251.4

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`O22261`	Arabidopsis thaliana	sp\|O22261\|NDT1_ARATH Nicotinamide adenine dinucleotide transporter 1, chloroplastic	71.100%	Swiss-Prot	High
`Q8RWA5`	Arabidopsis thaliana	sp\|Q8RWA5\|NDT2_ARATH Nicotinamide adenine dinucleotide transporter 2, mitochondrial	63.500%	Swiss-Prot	High

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