TkA03G618230 | RubberDandelionOmics

Gene overview

TkA03G618230

Reference: TK1151 Chr: Chr03 Coordinates: 157116104-157117837 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

1656 bp · TkA03G618230|TK1151|cDNA

CTGAATCTGGGGCCTTGGCCCTTGGGGGTGTTGGTGGTGGATAGAGAAAGAGAAAGAGAAAGAGAAAGAGAAAAGTCATCAGGGATTCCACTAAACTAACCTCTTCATTCAAACTTCAAACACACCTTCTCTCTCTATCTCTTTTCTTCCTTTCTTTCTCTCCCACCATCCGATAAAATAAAATATAAACCCAAATTACTAAAAACTAAAGATGGATTAGGACCCTTCCCTTCTCCAAACGGACCCTCCCACCATTTACC...

CDS

Download CDS FASTA

693 bp · TkA03G618230|TK1151|CDS

ATGGCGCTTGAGCGATTGACTCTCTCTCCCTCTCCCGTCGCCGACCCCCTGGCCAACGGCGCCGAAGACCTCAACAAGCCTCCCAGGCTGCCTCGCTGGACCAGGCAAGAGCTTCTTGTGCTTATCCAAGGGAAACGAGTTGCAGAGAACCGGGTTCGGAGGGGAAGGAGCGCCGTTCTCGCTTTCGGCTCCGCTCAGGTCGAGCCCAAGTGGTCCTCCGTCTCCTCTTACTGTAAACGTCATGGGGTTAACCGGGGACC...

Protein

Download Protein FASTA

230 aa · TkA03G618230|TK1151|PROTEIN

MALERLTLSPSPVADPLANGAEDLNKPPRLPRWTRQELLVLIQGKRVAENRVRRGRSAVLAFGSAQVEPKWSSVSSYCKRHGVNRGPVQCRKRWSNLAGDFKKIKEWESQIKDEAESFWLMRNDLRRERKLPGFFDREVYDILDGGGGGGGGGGGGGPSCAEGDKSLVLSLAPWGAETENEVVFDSGRTAADDRLFSDEVMGEKDCKEAPTAPTPISGDSMVFFVLISRC

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA03G618230`
TK1151 ID	TkA03G618230
OH-1004 ID	LXL04_011758
Relationship / confidence	Rbh Below Probable Coverage Or Synteny Threshold / Review
Protein identity (%)	97.800
Protein coverage (%)	TK1151 99.565 / OH-1004 67.164 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

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SNP / Indel variants and carrier samplesCRA009020 · TK1151

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Basic Information and Functional Annotation

Gene ID TkA03G618230

Location Chr03:157116104-157117837 (-)

Description Similar to ASR3: Trihelix transcription factor ASR3

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At2g33550`	Transcriptional repressor that binds DNA and plays a negative role in regulating microbe-associated molecular patterns-(MAMPs, e.g. flg22, elf18, chitin, and LPS) triggered immunity (PTI) by negatively regulating immune gene expression.	Phosphorylation of trihelix transcriptional repressor ASR3 by MAP KINASE4 negatively regulates Arabidopsis immunity.2015 · DOI: 10.1105/tpc.114.134809

Rice

No hit for this species in the current source table.

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_011758 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0006351 DNA-templated transcription Biological Process

GO:0006355 regulation of DNA-templated transcription Biological Process

GO:0006952 defense response Biological Process

GO:0045892 negative regulation of DNA-templated transcription Biological Process

GO:0050777 negative regulation of immune response Biological Process

GO:0071219 cellular response to molecule of bacterial origin Biological Process

GO:0005634 nucleus Cellular Component

GO:0003677 DNA binding Molecular Function

GO:0003700 DNA-binding transcription factor activity Molecular Function

GO:0042803 protein homodimerization activity Molecular Function

KEGG gene cross-reference

ath:AT2G33550

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.980

Rank 1 · TkA03G618230 · TK1151

Cytoplasm0.066

Rank 2 · TkA03G618230 · TK1151

Cell membrane0.021

Rank 3 · TkA03G618230 · TK1151

Endoplasmic reticulum0.013

Rank 4 · TkA03G618230 · TK1151

Plastid0.009

Rank 5 · TkA03G618230 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF15508NAAA-beta23-33 aa

PF13837Myb_DNA-bind_432-121 aa

PF00249Myb_DNA-binding32-43 aa

PF13921Myb_DNA-bind_633-104 aa

PF00249Myb_DNA-binding69-97 aa

PF15508NAAA-beta91-120 aa

PF16072DUF4813149-188 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA03G618230	`PF15508`	NAAA-beta	23	33	0.9	10.7
TkA03G618230	`PF13837`	Myb_DNA-bind_4	32	121	7.4e-11	43.0
TkA03G618230	`PF00249`	Myb_DNA-binding	32	43	0.019	15.8
TkA03G618230	`PF13921`	Myb_DNA-bind_6	33	104	0.0023	18.8
TkA03G618230	`PF00249`	Myb_DNA-binding	69	97	0.019	15.8
TkA03G618230	`PF15508`	NAAA-beta	91	120	0.9	10.7
TkA03G618230	`PF16072`	DUF4813	149	188	0.33	11.2

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q8VZ20`	Arabidopsis thaliana	sp\|Q8VZ20\|ASR3_ARATH Trihelix transcription factor ASR3	74.300%	Swiss-Prot	Medium

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