TkA03G616070 | RubberDandelionOmics

Gene overview

TkA03G616070

Reference: TK1151 Chr: Chr03 Coordinates: 156585667-156587387 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

756 bp · TkA03G616070|TK1151|cDNA

ATGAGCTTGGGAGAACCATTGGTGAAGGTACATTTGCAAAGGTTAAATTTTCAAAAAAATACAGAGACTGGGGAGTCGGTTGCTATAAAAGTTCTACCAAAAAGCAGCACATTCAAGCATAAAATGGTGGATCAGATTAAAAGAGAGATCTCTATAACAAAGATGATGAGGCATCCTAATATTGTGAGACTCCATGAGGTTTTGTCAAGCCACACGAAGATATATATAATACTGGAATTCATCAATGGAGGAGAGCTTTT...

CDS

Download CDS FASTA

756 bp · TkA03G616070|TK1151|CDS

ATGAGCTTGGGAGAACCATTGGTGAAGGTACATTTGCAAAGGTTAAATTTTCAAAAAAATACAGAGACTGGGGAGTCGGTTGCTATAAAAGTTCTACCAAAAAGCAGCACATTCAAGCATAAAATGGTGGATCAGATTAAAAGAGAGATCTCTATAACAAAGATGATGAGGCATCCTAATATTGTGAGACTCCATGAGGTTTTGTCAAGCCACACGAAGATATATATAATACTGGAATTCATCAATGGAGGAGAGCTTTT...

Protein

Download Protein FASTA

251 aa · TkA03G616070|TK1151|PROTEIN

MSLGEPLVKVHLQRLNFQKNTETGESVAIKVLPKSSTFKHKMVDQIKREISITKMMRHPNIVRLHEVLSSHTKIYIILEFINGGELFDRDVHKGKLYEKEARDYFQQLIDAIAYCHGKCVYHRDLIPENLLLDSEGKLKVYDFGLSALPLQGVELLYTTCGTPNYIAPEVLSNNGYDGAAADIWSCGVILYVILAGYLPFEESDLPSLYKKVNADEFSYPFWFPDNAKSLIDRILDPNPETVSINLSKYML

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

ID Mapping

Input ID	`TkA03G616070`
TK1151 ID	TkA03G616070
OH-1004 ID	LXL04_028053
Relationship / confidence	Multi Source To Oh1004 / Complex relationship
Protein identity (%)	87.700
Protein coverage (%)	TK1151 95.219 / OH-1004 49.491 Coverage and evidence Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.
Source version	TK1151 / GWHBCHF00000000

Open Full ID Mapping

SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene ID TkA03G616070

Location Chr03:156585667-156587387 (-)

Description Similar to CIPK24: CBL-interacting serine/threonine-protein kinase 24

Arabidopsis / Rice Reference Genes and Papers

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Arabidopsis

Reference gene ID	Possible function	Papers / DOI
`At5g35410`	May regulate intracellular Na⁺/K⁺ homeostasis and salt tolerance.	The Arabidopsis SOS2 protein kinase physically interacts with and is activated by the calcium-binding protein SOS3.2000 · DOI: 10.1073/pnas.97.7.3735 Regulation of SOS1, a plasma membrane Na+/H+ exchanger in Arabidopsis thaliana, by SOS2 and SOS3.2002 · DOI: 10.1073/pnas.122224699 The protein kinase SOS2 activates the Arabidopsis H(+)/Ca(2+) antiporter CAX1 to integrate calcium transport and salt tolerance.2004 · DOI: 10.1074/jbc.m309084200
`At4g24400`	CIPK serine-threonine protein kinases interact with CBL proteins.	No verified direct reference in this release

Rice

Reference gene ID	Possible function	Papers / DOI
`Os01g0536000`	CIPK serine-threonine protein kinases interact with CBL proteins.	No verified direct reference in this release
`Os06g0606000`	May regulate intracellular Na⁺/K⁺ homeostasis and salt tolerance.	Conservation of the salt overly sensitive pathway in rice.2007 · DOI: 10.1104/pp.106.092635
`Os07g0150700`	CIPK serine-threonine protein kinases interact with CBL proteins.	No verified direct reference in this release

Functional annotation source

View annotation sources

Functional annotation source: OH1004 · LXL04_028053 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)

GO:0006468 protein phosphorylation Biological Process

GO:0007165 signal transduction Biological Process

GO:0009651 response to salt stress Biological Process

GO:0009749 response to glucose Biological Process

GO:0010167 response to nitrate Biological Process

GO:0046777 protein autophosphorylation Biological Process

GO:0048364 root development Biological Process

GO:0005634 nucleus Cellular Component

GO:0005737 cytoplasm Cellular Component

GO:0009705 plant-type vacuole membrane Cellular Component

GO:0004672 protein kinase activity Molecular Function

GO:0004674 protein serine/threonine kinase activity Molecular Function

KEGG gene cross-reference

ath:AT4G24400

ath:AT5G35410

dosa:Os01g0536000

dosa:Os06g0606000

dosa:Os07g0150700

These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.

Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene

Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Cytoplasm0.592

Rank 1 · TkA03G616070 · TK1151

Nucleus0.312

Rank 2 · TkA03G616070 · TK1151

Endoplasmic reticulum0.084

Rank 3 · TkA03G616070 · TK1151

Cell membrane0.075

Rank 4 · TkA03G616070 · TK1151

Mitochondrion0.074

Rank 5 · TkA03G616070 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

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Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF07714PK_Tyr_Ser-Thr15-231 aa

PF14531Kinase-like18-50 aa

PF00069Pkinase19-240 aa

PF03109ABC120-32 aa

PF03109ABC153-146 aa

PF01636APH60-113 aa

PF12330Haspin_kinase69-160 aa

PF14531Kinase-like92-238 aa

Gene ID	Domain ID	Domain Name	Start aa	End aa	E-value	Score
TkA03G616070	`PF07714`	PK_Tyr_Ser-Thr	15	231	4.8e-30	105.4
TkA03G616070	`PF14531`	Kinase-like	18	50	4.2e-06	26.9
TkA03G616070	`PF00069`	Pkinase	19	240	4.4e-60	204.0
TkA03G616070	`PF03109`	ABC1	20	32	8.8e-05	22.5
TkA03G616070	`PF03109`	ABC1	53	146	8.8e-05	22.5
TkA03G616070	`PF01636`	APH	60	113	0.01	16.3
TkA03G616070	`PF12330`	Haspin_kinase	69	160	0.023	14.5
TkA03G616070	`PF14531`	Kinase-like	92	238	4.2e-06	26.9
TkA03G616070	`PF01636`	APH	118	146	0.01	16.3

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

Protein	Organism	Description	Identity	Database	Confidence
`Q9LDI3`	Arabidopsis thaliana	sp\|Q9LDI3\|CIPKO_ARATH CBL-interacting serine/threonine-protein kinase 24	71.500%	Swiss-Prot	High
`Q9STV4`	Arabidopsis thaliana	sp\|Q9STV4\|CIPK8_ARATH CBL-interacting serine/threonine-protein kinase 8	67.400%	Swiss-Prot	High
`Q5JLD8`	Oryza sativa subsp. japonica	sp\|Q5JLD8\|CIPK8_ORYSJ CBL-interacting protein kinase 8	69.200%	Swiss-Prot	High
`Q69Q47`	Oryza sativa subsp. japonica	sp\|Q69Q47\|CIPKO_ORYSJ CBL-interacting protein kinase 24	69.300%	Swiss-Prot	High
`Q6ZLP5`	Oryza sativa subsp. japonica	sp\|Q6ZLP5\|CIPKN_ORYSJ CBL-interacting protein kinase 23	61.000%	Swiss-Prot	High

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