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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA03G609880
Reference: TK1151 Chr: Chr03 Coordinates: 154880870-154881241 Strand: + Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

372 bp · TkA03G609880|TK1151|cDNA

ATGTCGGTACACTACCAAGCAGCCGTCGCAGTCCTATCTCAAGTAGCCCTAGCCGCCGATGGCGCAGTTCTTGGCTTATCCTTAGCGTACATTGCAGTCCGCAACCTCCTAAAGTTCAAGACGACCTCATCCGCCTTGAACAAAGTAAAAAAGGCACCTTCTGTAAGCGTCTTGGATCTCCGTTCTGTCCTCTCTCATGCTTCCGATGAAGATACAGACACGACTACTTTGAGTGATGAGAAGATCGTCATCGTTCGAGG...

CDS

Download CDS FASTA

372 bp · TkA03G609880|TK1151|CDS

ATGTCGGTACACTACCAAGCAGCCGTCGCAGTCCTATCTCAAGTAGCCCTAGCCGCCGATGGCGCAGTTCTTGGCTTATCCTTAGCGTACATTGCAGTCCGCAACCTCCTAAAGTTCAAGACGACCTCATCCGCCTTGAACAAAGTAAAAAAGGCACCTTCTGTAAGCGTCTTGGATCTCCGTTCTGTCCTCTCTCATGCTTCCGATGAAGATACAGACACGACTACTTTGAGTGATGAGAAGATCGTCATCGTTCGAGG...

Protein

Download Protein FASTA

123 aa · TkA03G609880|TK1151|PROTEIN

MSVHYQAAVAVLSQVALAADGAVLGLSLAYIAVRNLLKFKTTSSALNKVKKAPSVSVLDLRSVLSHASDEDTDTTTLSDEKIVIVRGVVETKSVVNANWKKQISNRLCILIRLPIKSFISQSG

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkA03G609880
TK1151 IDTkA03G609880
OH-1004 IDLXL04_022048
Relationship / confidenceNon Reciprocal Best Hit / Complex relationship
Protein identity (%)95.100
Protein coverage (%)TK1151 82.927 / OH-1004 26.087
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA03G609880
LocationChr03:154880870-154881241 (+)
DescriptionSimilar to SPL2: E3 ubiquitin-protein ligase SPL2
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

No hit for this species in the current source table.

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_022048 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0000209 protein polyubiquitination Biological Process
GO:0000266 mitochondrial fission Biological Process
GO:0009893 positive regulation of metabolic process Biological Process
GO:0010637 negative regulation of mitochondrial fusion Biological Process
GO:0010821 regulation of mitochondrion organization Biological Process
GO:0016567 protein ubiquitination Biological Process
GO:0016925 protein sumoylation Biological Process
GO:0031648 protein destabilization Biological Process
GO:0033235 positive regulation of protein sumoylation Biological Process
GO:0045824 negative regulation of innate immune response Biological Process
GO:0050689 negative regulation of defense response to virus by host Biological Process
GO:0050821 protein stabilization Biological Process
KEGG gene cross-reference
ath:AT1G54150
ath:AT1G59560
dme:Dmel_CG1134
hsa:79594
xla:414680
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Endoplasmic reticulum0.266
Rank 1 · TkA03G609880 · TK1151
Nucleus0.211
Rank 2 · TkA03G609880 · TK1151
Mitochondrion0.205
Rank 3 · TkA03G609880 · TK1151
Cytoplasm0.188
Rank 4 · TkA03G609880 · TK1151
Plastid0.130
Rank 5 · TkA03G609880 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

No result was found for this query.

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

Download current result

No result was found for this query.

JBrowse

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