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Gene Card

Enter a TK1151 or OH-1004 gene ID to view sequences, annotations and analyses in the corresponding reference genome.
Flanking length, max 10000 bp
Examples TkA01G624900 LXL04_000258

Gene overview

TkA03G609070
Reference: TK1151 Chr: Chr03 Coordinates: 154665084-154665966 Strand: - Type: protein_coding

cDNA / CDS / Protein Sequences

Available sequence downloads CDS FASTA Protein FASTA cDNA FASTA

cDNA

Download cDNA FASTA

369 bp · TkA03G609070|TK1151|cDNA

ATGTCCACGATAAGGCATATAACCGCATGTAATAAGGAGGAAGCTGGTGTGAAGACTCTTAAGTTAAGGGAGGAGAAAGATGTCCACGATAAGGCACAACATGCTGACAAGGAAGCTGAAAGGAATCTGGAACGGAATCTTCAACAGTTAGAAAGTAGGAAACAAGAGCTCGAGTCACAACAGGATCAAACGGAAACCAGACTTAAGAACATTCTAGAAGCCATTGACAAACATAATGAAGAGCTAAAACAGCTAAGCCA...

CDS

Download CDS FASTA

369 bp · TkA03G609070|TK1151|CDS

ATGTCCACGATAAGGCATATAACCGCATGTAATAAGGAGGAAGCTGGTGTGAAGACTCTTAAGTTAAGGGAGGAGAAAGATGTCCACGATAAGGCACAACATGCTGACAAGGAAGCTGAAAGGAATCTGGAACGGAATCTTCAACAGTTAGAAAGTAGGAAACAAGAGCTCGAGTCACAACAGGATCAAACGGAAACCAGACTTAAGAACATTCTAGAAGCCATTGACAAACATAATGAAGAGCTAAAACAGCTAAGCCA...

Protein

Download Protein FASTA

122 aa · TkA03G609070|TK1151|PROTEIN

MSTIRHITACNKEEAGVKTLKLREEKDVHDKAQHADKEAERNLERNLQQLESRKQELESQQDQTETRLKNILEAIDKHNEELKQLSQEQTDISKKLEDSKEKYKTLRDDIRLEGVRSGVQEL

Flanking Sequence Download

Sequence orientation and download details

Upstream/downstream are capped at 10000 bp per side. Negative-strand genes are reverse-complemented so the final FASTA follows transcriptional 5′→3′ orientation.

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ID Mapping

Input IDTkA03G609070
TK1151 IDTkA03G609070
OH-1004 IDLXL04_011654
Relationship / confidenceMulti Source To Oh1004 / Complex relationship
Protein identity (%)82.500
Protein coverage (%)TK1151 63.934 / OH-1004 6.601
Coverage and evidence

Coverage is the aligned span of the best-scoring HSP divided by representative protein length. A homolog match does not establish functional validation.

Source versionTK1151 / GWHBCHF00000000
Open Full ID Mapping
SNP / Indel variants and carrier samplesCRA009020 · TK1151

Expand to load variant records for this gene.

Basic Information and Functional Annotation

Gene IDTkA03G609070
LocationChr03:154665084-154665966 (-)
DescriptionSimilar to SMC1: Structural maintenance of chromosomes protein 1
Arabidopsis / Rice Reference Genes and Papers

Download references for this gene

Arabidopsis

No hit for this species in the current source table.

Rice

No hit for this species in the current source table.

Functional annotation source
View annotation sources

Functional annotation source: OH1004 · LXL04_011654 · GCA_047496595.1_OSU_TarKok_2.0. These OH1004 annotations are retrieved through ID mapping; the Arabidopsis/rice table below uses protein alignments from the query reference.

GO annotations (OH1004 source)
GO:0000070 mitotic sister chromatid segregation Biological Process
GO:0006281 DNA repair Biological Process
GO:0007059 chromosome segregation Biological Process
GO:0007062 sister chromatid cohesion Biological Process
GO:0007064 mitotic sister chromatid cohesion Biological Process
GO:0009314 response to radiation Biological Process
GO:0019827 stem cell population maintenance Biological Process
GO:0034087 establishment of mitotic sister chromatid cohesion Biological Process
GO:0051301 cell division Biological Process
GO:0051321 meiotic cell cycle Biological Process
GO:0072423 response to DNA damage checkpoint signaling Biological Process
GO:0090307 mitotic spindle assembly Biological Process
KEGG gene cross-reference
ath:AT3G54670
bta:282370
hsa:8243
mmu:24061
rno:63996
These KEGG gene identifiers are linked through homologous proteins; they do not establish pathway function for this gene.
Open Annotation Module

Gene expression

View expression in different studies, tissues and treatments. Results are presented separately by study and measurement unit.

View expression for this gene
Data sources and gene correspondence

Expression data come from public transcriptome studies. Reference genomes, sample metadata and measurement units are shown with the results. Ambiguous cross-reference correspondences do not select an expression record automatically; missing values do not mean zero expression.

Subcellular Localization Top 5

Computational predictions or homology annotations below do not replace localization experiments.

Nucleus0.599
Rank 1 · TkA03G609070 · TK1151
Cytoplasm0.349
Rank 2 · TkA03G609070 · TK1151
Mitochondrion0.042
Rank 3 · TkA03G609070 · TK1151
Extracellular0.030
Rank 4 · TkA03G609070 · TK1151
Cell membrane0.028
Rank 5 · TkA03G609070 · TK1151

LocPro · Direct prediction · Computational prediction, not experimental localization

Open Subcellular Module

Predicted Functional Domains

Domain results are from Pfam-A/HMMER; positions are amino-acid coordinates on the protein sequence.

PF00210Ferritin9-98 aa
PF03961FapA12-103 aa
PF09787Golgin_A512-110 aa
PF29847KAT314-114 aa
PF28231STB2_C15-98 aa
PF13086AAA_1116-104 aa
PF13476AAA_2317-110 aa
PF14932HAUS-augmin318-110 aa
Gene IDDomain IDDomain NameStart aaEnd aaE-valueScore
TkA03G609070PF00210Ferritin9980.01715.8
TkA03G609070PF03961FapA121030.112.9
TkA03G609070PF09787Golgin_A5121100.2211.7
TkA03G609070PF29847KAT3141149.46.2
TkA03G609070PF28231STB2_C15980.2312.6
TkA03G609070PF13086AAA_11161042.18.7
TkA03G609070PF13476AAA_23171109.67.5
TkA03G609070PF14932HAUS-augmin3181100.2111.8
TkA03G609070PF23020PEX14-like_2nd18884.68.3
TkA03G609070PF30150YGR130C_N191110.002318.3
TkA03G609070PF04632FUSC19891.08.6
TkA03G609070PF18595Nuf2_DHR10-like20680.6610.8
TkA03G609070PF25926DUF797120840.6710.9
TkA03G609070PF02601Exonuc_VII_L211080.3311.1
TkA03G609070PF05266DUF724211062.88.5
TkA03G609070PF01519DUF1621585.48.3

Arabidopsis / Rice Protein Homology

Only Arabidopsis and rice are shown. Swiss-Prot entries are reviewed; TrEMBL entries are supplementary sequence candidates. Similarity is not experimental validation.

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No result was found for this query.

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